rs254787021 SNP Detail

Summary

• ID
  rs254787021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112685880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCACCCC ATACTCCTGA
  GGCCTGGAGT CTTCAGGCAA AAATGATGGC AGCTGTTGAC CTGCCCCAGC AAACAAGTAA
  GGACAGACCC CTCTTAAGGA CAGACCCCCT CCCTTAGGCG CCAGCCAGAG CAGCTTGGTC
  TGTGGTGTCT CCTTTTCACT CAACAGCCAA GGCCCTCTGA AGCCTGGCCA TTTCTCTACA
  Y
  ACTTCCTATG TTTATTGTTT CTGAGCCTTT TAAAAGCCCC AAGAATGTGG TGACAAGTGT
  GTGTGTGTGT GTGTGAGTGT GTGTGTGTGT GAGTGTGTGT GTGTGTGAGT GTGTGTGTGT
  GTACCTGTTC ATGCCTGAAC TTCCAGTTCT TTTAGGTGAC TACCCAGGAG AGGGATTGCA
  GGAGCACATG CGAATTTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170473	CHEV_12_113957657	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254787021					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112685880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5179	CpG island 5179	1814 bp proximal
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473583	regulatory region 473583	1194 bp proximal
Tssr115398	transcription start site region 115398	190 bp downstream
Tssr115399	transcription start site region 115399	1659 bp upstream