rs254794264 SNP Detail

Summary

• ID
  rs254794264
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:91074665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTACTCT CAGTTCCTAA
  AAGTGCATGG ACTTCACAAT GTGCAGAACC CTTCACCAAG TTAGTACTTA AGTTTTAAGA
  AAAAGCCTTT GAGCTCATTC ATTACAGTCA CACTAGAGTA ACAGAGGCTA TGAAGACCGC
  TTACTTAAAA AAGAATAGAC ATTTTATTCT CATGAAACTT CAGAGAAGTT TGGACTCTTT
  M
  ATTCTCTCCT GGCTGGCGAT TTAAAGGGCT CATGTATTTT AGCATGATTT AGCTACGGGG
  ACGGCGGGTG GGGGTGGAGC GGGGGGCACG GGGACTGTAA AATGCTCAGA AAGTGGGTCT
  GTCAACAAGA CAACAGATGG TATCTGGCAG TGCAGTGGCT GCCTGAACAG TCTCACATTT
  CACCCGTTGC TTTAATGCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394950036	MGP_WTSI_15_91020893	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254794264					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394950036	MGP_WTSI_15_91020893	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:91074665 () rs orientation: forward

Symbol	Name	Function Class
Abcd2	ATP-binding cassette, sub-family D member 2	within coordinates
Rr507988	regulatory region 507988	1327 bp proximal
Tssr135946	transcription start site region 135946	523 bp downstream
Tssr135947	transcription start site region 135947	923 bp downstream
Tssr135948	transcription start site region 135948	943 bp downstream
Tssr135949	transcription start site region 135949	978 bp downstream
Tssr135950	transcription start site region 135950	1051 bp downstream
Tssr135951	transcription start site region 135951	1249 bp downstream
Tssr135952	transcription start site region 135952	1271 bp downstream
Tssr135953	transcription start site region 135953	1548 bp downstream
Tssr135954	transcription start site region 135954	1570 bp downstream