rs254801781 SNP Detail

Summary

• ID
  rs254801781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81202064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTGACA AAGGCCACAA
  AGTATGGGCC ATGATCTAGA GATCCACAGA AGGAAGTGGA TACCTAAGTC TTGGGTTGGG
  GAGAATGCTC TGGGATCACT GGTGGCATCG CTGAACATGC AGAGCCCAGG GCCTGCTCAT
  TCTGCTAGTG CATCCTGTGT ATCTCATGAC AATAAACAGC AACAACCAAT CTCATAGCTC
  R
  GTCAACCCTT TACAGTCTGT ATAGGCGGCG CTCCACTTGG GTTCCTGTTT TCTCACCAGA
  CATCACCTCC CCCTCTCTGG TCACCAACAT GCTAAGCTTG CTCCAGTCAG GGTCCTGGCC
  AACTTACCCA GGACACTGCT GTGGGGTGGG AGCCCAAGCC ACAGGCCCTC CCTGCTTGCA
  GTTCTGGCTC TGTAGGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381035177	MGP_WTSI_10_80828975	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254801781					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381035177	MGP_WTSI_10_80828975	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81202064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	786 bp distal
Fzr1	fizzy and cell division cycle 20 related 1	649 bp downstream
Mfsd12	major facilitator superfamily domain containing 12	5 bp downstream
Rr435631	regulatory region 435631	within coordinates
Rr435632	regulatory region 435632	1077 bp proximal
Tektip1	tektin bundle interacting protein 1	410 bp upstream
Tssr94744	transcription start site region 94744	1929 bp downstream
Tssr94745	transcription start site region 94745	1858 bp downstream
Tssr94746	transcription start site region 94746	1816 bp downstream
Tssr94747	transcription start site region 94747	1804 bp downstream
Tssr98595	transcription start site region 98595	1371 bp upstream
Tssr98596	transcription start site region 98596	429 bp upstream
Tssr98597	transcription start site region 98597	405 bp upstream
Tssr98598	transcription start site region 98598	387 bp upstream