rs254801906 SNP Detail

Summary

• ID
  rs254801906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13088836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCGTGGA CAGTGTTCAC
  CATGTTATAA CACTTTAGTT CTGGGCTGCC AAACTTGATT TTATTCAAAT CAGAACCTAT
  GGCTGCTGGT GGCATGGTGG GTCTGTGTGA CCATCTAAGG AGTGAGCATA GTGTCCTAGC
  TAAGCCATTC ATGGAGACTG AGGTTAGTCC GAAGAGCGAG AGCTGGAAGC CCAGCCGGTC
  R
  CCTTCTTTCC CTGGGTAGGG ACCTTTAAGC ACCTGCTCTT TCCAGGCCTA GGAACAGCCT
  TGGGCAGACA GGCCAAATGC CTTTGTAGAA GCACATTCTC ACTGAGGCAA AAGAAGATGA
  CCAGGAGATA AATGACATCA GAGAGTGGCT GGTACTGTGA CCAGCGTCAA GACAGGGGGA
  AGGGAGGGGG CGTGAAGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373736745	MGP_WTSI_8_13038836	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254801906					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373736745	MGP_WTSI_8_13038836	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13088836 () rs orientation: forward

Symbol	Name	Function Class
F10	coagulation factor X	within coordinates
Rr659843	regulatory region 659843	1504 bp distal
Rr659844	regulatory region 659844	988 bp distal
Rr659845	regulatory region 659845	208 bp distal
Rr659846	regulatory region 659846	1718 bp proximal
Tssr76325	transcription start site region 76325	1533 bp downstream
Tssr76326	transcription start site region 76326	1484 bp downstream
Tssr76327	transcription start site region 76327	1474 bp downstream
Tssr76328	transcription start site region 76328	1446 bp downstream
Tssr76329	transcription start site region 76329	998 bp downstream
Tssr76330	transcription start site region 76330	851 bp downstream
Tssr76331	transcription start site region 76331	467 bp upstream
Tssr76332	transcription start site region 76332	490 bp upstream
Tssr76333	transcription start site region 76333	522 bp upstream
Tssr76334	transcription start site region 76334	533 bp upstream
Tssr76335	transcription start site region 76335	701 bp upstream