rs254814871 SNP Detail

Summary

• ID
  rs254814871
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141502430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTGCTGG AAAGAGTGGG
  GCGCTCCTCA AGTTCACATG GTGACACCTA AGGTGAGCAG GGGCAAGCAG GTGGCTGAAG
  GTGGAGGGGA CACTTCATAC CTTGGGACTT GTTCACCTAG TAGTACACTG TTGACTAGAG
  TAGCTTCCAT TGAAGTACAC AGTAAATATA ATCCACATCT GTAAAGTTCT GAGCCTGGCC
  S
  CCATCAGTTC TCTTCCACCA CCTTCCACAG CACATCTTAA GGAAACACAA GGGTTTCATG
  CAAGAAAAAG AGAGTCCCAG TAGGCCTGAC CGCCTCCACC ACCGTCCTTA AGGCCACACT
  CTTTTCAGAG GCTTCTCTGG ATCTTAGGTG CCATGAATCT CCTTGACTCT CTGCTTCTCT
  TAAACATAGA AAGGGTCTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373440936	MGP_WTSI_7_149134598	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254814871					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373440936	MGP_WTSI_7_149134598	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141502430 () rs orientation: forward

Symbol	Name	Function Class
Brsk2	BR serine/threonine kinase 2	1058 bp upstream
Cpgi19954	CpG island 19954	522 bp proximal
Gm20501	predicted gene 20501	within coordinates
Rr154751	regulatory region 154751	230 bp distal
Rr166975	regulatory region 166975	within coordinates
Tssr70113	transcription start site region 70113	954 bp upstream
Tssr70114	transcription start site region 70114	981 bp upstream
Tssr70115	transcription start site region 70115	995 bp upstream
Tssr70116	transcription start site region 70116	1159 bp upstream
Tssr70117	transcription start site region 70117	1182 bp upstream
Tssr70118	transcription start site region 70118	1289 bp upstream
Tssr75722	transcription start site region 75722	1761 bp downstream