rs254817140 SNP Detail

Summary

• ID
  rs254817140
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40641984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTAT TTTGTTATTG GGGGAAGTGC
  A
  CCTCCCAGGA TGCTTGTGGT CTAGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322918974	CHEV_9_40538771	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254817140					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40641984 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21598	CpG island 21598	28 bp proximal
Gm68229	predicted gene, 68229	within coordinates
Gm68234	predicted gene, 68234	259 bp upstream
Rr1916	regulatory region 1916	within coordinates
Rr676903	regulatory region 676903	within coordinates
Rr676904	regulatory region 676904	270 bp proximal
Rr676905	regulatory region 676905	904 bp proximal
Rr676906	regulatory region 676906	1665 bp proximal
Tssr84462	transcription start site region 84462	266 bp upstream
Tssr84463	transcription start site region 84463	315 bp upstream