rs254817266 SNP Detail

Summary

• ID
  rs254817266
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165470271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAGGACG GCTCTGGAGC
  CGGATTGCGG GTGCCGCCCG CTCACAGCGG AACCGAGCTG GGTTCGCCGA CGGGCATCCG
  GTCCTCGGCC ACCGCCGGGA ACCGGCTTGG AAGGGATCAG GCCGGAAGAG AATCAGTGCC
  TGAGGCCCGG AGCGCGGCGA GGGAAGGGAA CGCGCCGCAG CCTTGCTCAG GGGACGAAAT
  Y
  TTGGGGTACT AGGAGCAGTG ATCTTCCCCG AAATTCCAAC TTATTAAGTA AGCAGTTTGT
  ACTGAAGCCA TTTGATGCTC AGTCCCTGAA CCACTCCTGT TGTCCCCTTG TGCAATGGAA
  GGGACAGAGG TCCAGAGACC TTGTGGAGTT CCCGGAAGGA CCCCCGCGCT CCTGGAAGGA
  GGACCATAGG GGCTGGAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320086959	CHEV_1_167572833	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254817266					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165470271 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	within coordinates
Gm18407	predicted gene, 18407	1197 bp downstream
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	997 bp downstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	360 bp upstream
Rr396497	regulatory region 396497	1023 bp downstream
Rr396498	regulatory region 396498	318 bp downstream