rs254819606 SNP Detail

Summary

• ID
  rs254819606
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:122969335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCTGCTT CTGTCCTGCC
  CAGTATTATG AGAAATCTAA AAGCAACCTG AGCAAATGGG TGGATTTCTG TTCATCAAAG
  ATTTGAGAGT GTATGAAAAA TTTTTAAAAA ATGCATGAAA AGTCGTATAT TTAGGATGCT
  TTACTCATTT GTTTACACAC TCAGAGTAAA GTAATAGTAA TAATATAGTA ATAGCACACA
  W
  TAGTGTATTA CAGATGATGT GTCAGACCAA GTCCAGGAAG AACACAGACT CTGTTCTCAA
  GAAATTTAGA AGAAAGTCAA TGAATCAGTG TCAGCTAATT ATAATGCCAG ACTCTTATTA
  TCCCAGCTAC TCAGGATGTT AGATAGTAGG ACACTAAGTG TGGAGCTAGC CTGGGCTATG
  TAAAAGAACT ATATCTGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321934846	CHEV_6_122942394	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254819606					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122969335 () rs orientation: forward

Symbol	Name	Function Class
Clec4a4	C-type lectin domain family 4, member a4	Intron
D6Mit300	DNA segment, Chr 6, Massachusetts Institute of Technology 300	920 bp distal