rs254820377 SNP Detail

Summary

• ID
  rs254820377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:19876262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTAGATC TTTCATGCAC
  TCAAATTTCT GCCAGCTTAA GAAACATCCT GCCTCCCAAC CTCTGGCCCA TGGTTGCAGC
  AGTCTCTTTG TAACTTTGAG ACTGAACATA CATGTATCAG TTTCCCTGGG AATTGGTTTT
  CAGCATAATG TCCCTTCAGT TCTCCTGATA TTCTCAGATC AGGCATGCTC TTTAACTTGC
  R
  TTTTCATAGA TTGGATCATT TGAACAGTTG GGTCTTGCCT TTGGGGCGCC TTTCTGATTG
  TCCCAGTGCT GAGTAATTGG GTTCTCTCTA ATGGCGTTAA TCTTTCTAGC AAATATATCT
  GCTTTGTCCA CACCTACCTT GTCTGTAATT TCAAACTTGT TTATATTCCT TTTTATCCTA
  AATGCACATT TACATGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360789937	MGP_WTSI_4_19803409	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254820377					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360789937	MGP_WTSI_4_19803409	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:19876262 () rs orientation: forward

Symbol	Name	Function Class
Atp6v0d2	ATPase, H+ transporting, lysosomal V0 subunit D2	576 bp downstream
Gm68467	predicted gene, 68467	within coordinates
Tssr41030	transcription start site region 41030	867 bp downstream
Tssr41031	transcription start site region 41031	932 bp downstream
Tssr41032	transcription start site region 41032	949 bp downstream
Tssr41033	transcription start site region 41033	988 bp downstream
Tssr41034	transcription start site region 41034	1029 bp downstream
Tssr41035	transcription start site region 41035	1064 bp downstream
Tssr41036	transcription start site region 41036	1091 bp downstream
Tssr41037	transcription start site region 41037	1213 bp downstream
Tssr41038	transcription start site region 41038	1279 bp downstream
Tssr41039	transcription start site region 41039	1291 bp downstream
Tssr41040	transcription start site region 41040	1333 bp downstream
Tssr41041	transcription start site region 41041	1360 bp downstream
Tssr41042	transcription start site region 41042	1367 bp downstream
Tssr41043	transcription start site region 41043	1396 bp downstream
Tssr41044	transcription start site region 41044	1484 bp downstream
Tssr41045	transcription start site region 41045	1509 bp downstream
Tssr41046	transcription start site region 41046	1545 bp downstream
Tssr41047	transcription start site region 41047	1613 bp downstream
Tssr41048	transcription start site region 41048	1632 bp downstream
Tssr41049	transcription start site region 41049	1754 bp downstream
Tssr41050	transcription start site region 41050	1893 bp downstream