rs254824998 SNP Detail

Summary

• ID
  rs254824998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74817841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTGGCT CCGCCCCAAA
  ACTAAGTTTA AAAGTTTACT CAGGGTGCTG AGGTTAAACG GCTTTATCTT GGTTCACATT
  TGGTGGAGAA GCTAAACTTT TGCCAAGGCA GCAGTATCTT TTATTTTGTG TTTGTTTTTC
  TTTTGAGACA AAGTCTCACC TTGTAGCCAA TACTGGCCTT GAATTTACTG TGTAACCCAA
  Y
  CTGGCCTTGA GTTTGGATAC TTTTCCTGAC TGAAGCCTTC AGAGTGCTGG AATTATATGC
  ATATGCCACC ATACCCAACT TTCAAGTCAG AAACCTAAAA TTTTAGTTTC GCCCCCACCC
  CATCCCCCAA ACAAAAGTGG GTATAGATGC AGGTGTATAA ATACTTGGCT ACCAGCTTGT
  TTGCATTTGT ATATACATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383890616	MGP_WTSI_11_74740517	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254824998					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383890616	MGP_WTSI_11_74740517	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74817841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3250	CpG island 3250	571 bp distal
Gm72316	predicted gene, 72316	659 bp downstream
Rr451010	regulatory region 451010	1253 bp distal
Rr451011	regulatory region 451011	1182 bp distal
Rr451012	regulatory region 451012	906 bp distal
Rr451013	regulatory region 451013	986 bp distal
Rr451014	regulatory region 451014	within coordinates
Rr451015	regulatory region 451015	1015 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor	within coordinates
Srr	serine racemase	1067 bp upstream
Tssr102917	transcription start site region 102917	1182 bp downstream
Tssr102918	transcription start site region 102918	1148 bp downstream
Tssr102919	transcription start site region 102919	1106 bp downstream
Tssr102920	transcription start site region 102920	882 bp downstream
Tssr102921	transcription start site region 102921	128 bp downstream
Tssr102922	transcription start site region 102922	677 bp upstream
Tssr102923	transcription start site region 102923	697 bp upstream
Tssr102924	transcription start site region 102924	711 bp upstream
Tssr109155	transcription start site region 109155	1299 bp upstream
Tssr109156	transcription start site region 109156	1030 bp upstream
Tssr109157	transcription start site region 109157	504 bp downstream