rs254827647 SNP Detail

Summary

• ID
  rs254827647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13445978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTTTTTT TTTAATTAGC
  TAGAATAAAT TATGTTCCCC GAAGACTCAA AAGCCTTCAG CAGCTTAGGG ACAGAACAAG
  GAGATACAGA GTGTCCCTCT GATCTGTCCT CCTCCACTCT TAACCCATAA TATTTTTGCA
  GGGAGGTTGG GTTCCTCGCA GGAATGTCCC CATTGCCACT TAGATTTCTT CTCCTGTCCT
  R
  AATTCTTAAG AGTTAAGAAA GACTCTTGTT GCTTTCTATT CCAACTCTTG AGGGGAGAGG
  CAGCTATCCA GAGTCCATCA GTGCTCAGTG GCAACAGAAT TAACATGAAA AAACTACCTG
  TGCTGAACGT GCAGACAAAC ACATCCCTGC TTCCATGCTG TGTTACTCAG TGCACCTTCT
  TACTGAATGC TCAAGACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348676336	MGP_WTSI_1_13365835	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254827647					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348676336	MGP_WTSI_1_13365835	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13445978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi41	CpG island 41	862 bp distal
Gm29570	predicted gene 29570	within coordinates
Gm51852	predicted gene, 51852	448 bp downstream
Gm70663	predicted gene, 70663	1037 bp upstream
Ncoa2	nuclear receptor coactivator 2	1671 bp upstream
Rr407895	regulatory region 407895	1682 bp distal
Rr407897	regulatory region 407897	1181 bp distal
Rr407898	regulatory region 407898	1474 bp distal
Rr407899	regulatory region 407899	837 bp distal
Rr407900	regulatory region 407900	1212 bp proximal
Tssr10991	transcription start site region 10991	1863 bp upstream
Tssr10992	transcription start site region 10992	1685 bp upstream
Tssr10993	transcription start site region 10993	1679 bp upstream
Tssr10994	transcription start site region 10994	1572 bp upstream
Tssr10995	transcription start site region 10995	1491 bp upstream
Tssr10996	transcription start site region 10996	1343 bp upstream
Tssr10997	transcription start site region 10997	1279 bp upstream