rs254827863 SNP Detail

Summary

• ID
  rs254827863
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75062153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATAAGGAG GTCGGCTGGG
  TCTTCAGTTC CTTCTTGTTC TATCCCTCTC CACCGACTCA AGCCCTTGTT GTATCGCTAT
  GGGGCCAACC ACATAAACCT TGCCCAAGTT TCACTGTGTA CTCCCCTCCC CTCCCCTCCC
  CTTCTCTCCT CTCCTCTCCT CCACGCCCCA CCACCACCAC CACCACAGTT TCAAGTCTAC
  R
  GCTAGCCTCG AACTCACAAA GGCGTCTACT TCCCACGTAC AAGGATGCGC ACCACCATGC
  CCCTCCTCTT AACTTTGCTT TCCCCTTCTT CCTGAGCTCC TCTGGTCATC CTGGTGCAGC
  TTCCTCCTCT CCGTGAACGC ATGACGACCC CATTTAGAGC CCGGAGACAG AATCGGGCTG
  TTTTGGAGGA CCTGTTCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383894005	MGP_WTSI_11_74984829	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254827863					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383894005	MGP_WTSI_11_74984829	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75062153 () rs orientation: forward

Symbol	Name	Function Class
1700016P03Rik	RIKEN cDNA 1700016P03 gene	681 bp upstream
Cpgi3251	CpG island 3251	1914 bp distal
Cpgi3252	CpG island 3252	404 bp distal
Cpgi3253	CpG island 3253	6 bp proximal
Cpgi3254	CpG island 3254	749 bp proximal
Hic1	hypermethylated in cancer 1	1808 bp upstream
Rr402719	regulatory region 402719	1671 bp upstream
Rr451076	regulatory region 451076	1318 bp distal
Rr451077	regulatory region 451077	656 bp distal
Rr451078	regulatory region 451078	658 bp proximal
Rr451079	regulatory region 451079	1886 bp proximal
Tssr102928	transcription start site region 102928	1117 bp upstream
Tssr102929	transcription start site region 102929	1144 bp upstream
Tssr102930	transcription start site region 102930	1226 bp upstream