rs254828375 SNP Detail

Summary

• ID
  rs254828375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:37849696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACAATCG GGTATCTAGA
  ATGCAAATGT AATCCAGTGG TTTTCAACCT GTGGGTCCAG ACCCCTTGAG AGGGTGGAAT
  GAACCTTTCA CAGGGGTCGC ATATCAGATA TCTTGCATAC TAGATATTTA CATTTTGATT
  CATAACGGTA GCAAAATTAC CATTATGATG TACCGAAGAA GATAATTTTA TGGTTGGGGG
  Y
  CACCACAACA TAAGGAAGTG TGTATTGAAA GGTGGCAGCA CTATGATTAA GAGCTTTATA
  TCTTTAGAGC AAGGGGCTTT TTTTTTGTTT GTTTGGTTTT TTGTTGTTTT TGTTGTTTTG
  AGATAAGGGT TTCTCTGTGT AACAGCTCTG GCTGTCCTGA AGCTTGCTTT GTAGACCAGG
  CTCAATCAGA AGTTGCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367996736	MGP_WTSI_6_37822761	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254828375					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367996736	MGP_WTSI_6_37822761	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:37849696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17305	CpG island 17305	986 bp distal
Rr368051	regulatory region 368051	1068 bp downstream
Rr399615	regulatory region 399615	1906 bp downstream
Rr628726	regulatory region 628726	1940 bp distal
Rr628727	regulatory region 628727	2000 bp distal
Rr628728	regulatory region 628728	1258 bp distal
Trim24	tripartite motif-containing 24	within coordinates
Tssr55625	transcription start site region 55625	1879 bp downstream
Tssr55626	transcription start site region 55626	1834 bp downstream
Tssr55627	transcription start site region 55627	1805 bp downstream
Tssr55628	transcription start site region 55628	1788 bp downstream
Tssr55629	transcription start site region 55629	1746 bp downstream
Tssr60361	transcription start site region 60361	1417 bp upstream
Tssr60362	transcription start site region 60362	1271 bp upstream