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rs254830083 SNP Detail
Summary
  • ID
    rs254830083
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44129120 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTCCA TATCAGTCTC CACTTCCTCC
W
CCTCCTCCTC CTGCTGCTTC CCCTC                                      

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BUB/BnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
CE/J
DBA/2J
I/LnJ
KK/HlJ
LEWES/EiJ
MA/MyJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
QSi3/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
WSB/EiJ
ZALENDE/EiJ
ss918712689 MGP_WTSI_7_44479696 EVA_MGPV3 EVA_MGPV3 f SNP T T A T A A A T A A A A A A A T T A A T A A T A T A A T A T A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BUB/BnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
CE/J
DBA/2J
I/LnJ
KK/HlJ
LEWES/EiJ
MA/MyJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
QSi3/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
WSB/EiJ
ZALENDE/EiJ
rs254830083 SNP T T A T A A A T A A A A A A A T T A A T A A T A T A A T A T A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss918712689 MGP_WTSI_7_44479696 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44129120 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2226 transcription start site region 2226 1751 bp downstream
Tssr2227 transcription start site region 2227 676 bp downstream
Tssr2228 transcription start site region 2228 382 bp upstream
Tssr2229 transcription start site region 2229 658 bp upstream
Tssr2230 transcription start site region 2230 837 bp upstream
Tssr2231 transcription start site region 2231 970 bp upstream
Tssr2232 transcription start site region 2232 1145 bp upstream
Tssr2233 transcription start site region 2233 1178 bp upstream
Tssr2234 transcription start site region 2234 1337 bp upstream
Tssr2235 transcription start site region 2235 1971 bp upstream
Tssr66253 transcription start site region 66253 1994 bp downstream
Tssr66254 transcription start site region 66254 1946 bp downstream
Tssr66255 transcription start site region 66255 1919 bp downstream
Tssr66256 transcription start site region 66256 1870 bp downstream
Tssr66257 transcription start site region 66257 1859 bp downstream
Tssr66258 transcription start site region 66258 1816 bp downstream
Tssr66259 transcription start site region 66259 1780 bp downstream
Tssr66260 transcription start site region 66260 1673 bp downstream
Tssr66261 transcription start site region 66261 1652 bp downstream
Tssr66262 transcription start site region 66262 1645 bp downstream
Tssr66263 transcription start site region 66263 1633 bp downstream
Tssr66264 transcription start site region 66264 1609 bp downstream
Tssr66265 transcription start site region 66265 1566 bp downstream
Tssr66266 transcription start site region 66266 1549 bp downstream
Tssr66267 transcription start site region 66267 1512 bp downstream
Tssr66268 transcription start site region 66268 1496 bp downstream
Tssr66269 transcription start site region 66269 1460 bp downstream
Tssr66270 transcription start site region 66270 1425 bp downstream
Tssr66271 transcription start site region 66271 1393 bp downstream
Tssr66272 transcription start site region 66272 1341 bp downstream
Tssr66273 transcription start site region 66273 1323 bp downstream
Tssr66274 transcription start site region 66274 1318 bp downstream
Tssr66275 transcription start site region 66275 1298 bp downstream
Tssr66276 transcription start site region 66276 1278 bp downstream
Tssr66277 transcription start site region 66277 1258 bp downstream
Tssr66278 transcription start site region 66278 1214 bp downstream
Tssr66279 transcription start site region 66279 1169 bp downstream
Tssr66280 transcription start site region 66280 1147 bp downstream
Tssr66281 transcription start site region 66281 1107 bp downstream
Tssr66282 transcription start site region 66282 1090 bp downstream
Tssr66283 transcription start site region 66283 1076 bp downstream
Tssr66284 transcription start site region 66284 1064 bp downstream
Tssr66285 transcription start site region 66285 1050 bp downstream
Tssr66286 transcription start site region 66286 1011 bp downstream
Tssr66287 transcription start site region 66287 975 bp downstream
Tssr66288 transcription start site region 66288 950 bp downstream
Tssr66289 transcription start site region 66289 868 bp downstream
Tssr66290 transcription start site region 66290 830 bp downstream
Tssr66291 transcription start site region 66291 804 bp downstream
Tssr66292 transcription start site region 66292 772 bp downstream
Tssr66293 transcription start site region 66293 750 bp downstream
Tssr66294 transcription start site region 66294 726 bp downstream
Tssr66295 transcription start site region 66295 461 bp downstream
Tssr66296 transcription start site region 66296 290 bp downstream
Tssr66297 transcription start site region 66297 266 bp downstream
Tssr66298 transcription start site region 66298 211 bp downstream
Tssr66299 transcription start site region 66299 191 bp downstream
Tssr66300 transcription start site region 66300 168 bp downstream
Tssr66301 transcription start site region 66301 152 bp downstream
Tssr66302 transcription start site region 66302 111 bp downstream
Tssr66303 transcription start site region 66303 102 bp downstream
Tssr66304 transcription start site region 66304 97 bp downstream
Tssr66305 transcription start site region 66305 58 bp downstream
Tssr66306 transcription start site region 66306 4 bp downstream
Tssr66307 transcription start site region 66307 1 bp upstream
Tssr66308 transcription start site region 66308 54 bp upstream
Tssr66309 transcription start site region 66309 75 bp upstream
Tssr66310 transcription start site region 66310 113 bp upstream
Tssr66311 transcription start site region 66311 190 bp upstream
Tssr66312 transcription start site region 66312 206 bp upstream
Tssr66313 transcription start site region 66313 227 bp upstream
Tssr66314 transcription start site region 66314 235 bp upstream
Tssr66315 transcription start site region 66315 255 bp upstream
Tssr66316 transcription start site region 66316 314 bp upstream
Tssr66317 transcription start site region 66317 326 bp upstream
Tssr66318 transcription start site region 66318 371 bp upstream
Tssr66319 transcription start site region 66319 394 bp upstream
Tssr66320 transcription start site region 66320 421 bp upstream
Tssr66321 transcription start site region 66321 439 bp upstream
Tssr66322 transcription start site region 66322 459 bp upstream
Tssr66323 transcription start site region 66323 505 bp upstream
Tssr66324 transcription start site region 66324 534 bp upstream
Tssr66325 transcription start site region 66325 564 bp upstream
Tssr66326 transcription start site region 66326 605 bp upstream
Tssr66327 transcription start site region 66327 619 bp upstream
Tssr66328 transcription start site region 66328 635 bp upstream
Tssr66329 transcription start site region 66329 674 bp upstream
Tssr66330 transcription start site region 66330 693 bp upstream
Tssr66331 transcription start site region 66331 707 bp upstream
Tssr66332 transcription start site region 66332 728 bp upstream
Tssr66333 transcription start site region 66333 776 bp upstream
Tssr66334 transcription start site region 66334 788 bp upstream
Tssr66335 transcription start site region 66335 797 bp upstream
Tssr66336 transcription start site region 66336 806 bp upstream
Tssr66337 transcription start site region 66337 824 bp upstream
Tssr66338 transcription start site region 66338 880 bp upstream
Tssr66339 transcription start site region 66339 931 bp upstream
Tssr66340 transcription start site region 66340 976 bp upstream
Tssr66341 transcription start site region 66341 1021 bp upstream
Tssr66342 transcription start site region 66342 1083 bp upstream
Tssr66343 transcription start site region 66343 1115 bp upstream
Tssr66344 transcription start site region 66344 1260 bp upstream
Tssr66345 transcription start site region 66345 1293 bp upstream
Tssr66346 transcription start site region 66346 1349 bp upstream
Tssr66347 transcription start site region 66347 1387 bp upstream
Tssr66348 transcription start site region 66348 1428 bp upstream
Tssr66349 transcription start site region 66349 1452 bp upstream
Tssr66350 transcription start site region 66350 1480 bp upstream
Tssr66351 transcription start site region 66351 1488 bp upstream
Tssr66352 transcription start site region 66352 1524 bp upstream
Tssr66353 transcription start site region 66353 1598 bp upstream
Tssr66354 transcription start site region 66354 1612 bp upstream
Tssr66355 transcription start site region 66355 1639 bp upstream
Tssr66356 transcription start site region 66356 1656 bp upstream
Tssr66357 transcription start site region 66357 1670 bp upstream
Tssr66358 transcription start site region 66358 1682 bp upstream
Tssr66359 transcription start site region 66359 1708 bp upstream
Tssr66360 transcription start site region 66360 1720 bp upstream
Tssr66361 transcription start site region 66361 1746 bp upstream
Tssr66362 transcription start site region 66362 1778 bp upstream
Tssr66363 transcription start site region 66363 1795 bp upstream
Tssr66364 transcription start site region 66364 1828 bp upstream
Tssr66365 transcription start site region 66365 1848 bp upstream
Tssr66366 transcription start site region 66366 1868 bp upstream
Tssr66367 transcription start site region 66367 1896 bp upstream
Tssr66368 transcription start site region 66368 1918 bp upstream
Tssr66369 transcription start site region 66369 1952 bp upstream
Tssr66370 transcription start site region 66370 1994 bp upstream
Tssr72200 transcription start site region 72200 1255 bp upstream
Tssr72201 transcription start site region 72201 745 bp upstream
Tssr72202 transcription start site region 72202 97 bp downstream
Tssr72203 transcription start site region 72203 483 bp downstream
Tssr72204 transcription start site region 72204 1079 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory