rs254835109 SNP Detail

Summary

• ID
  rs254835109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116744361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGGTGCG TCCGCGAGAG
  CGCGGGGAAG GGGAAGAACG AGGCTCTATG GAGGGAGAAA GAGGAAGCGC GCCCCACCAG
  AGCCCCGCCC CTTCCCCACG CCAATGCCCG GGCTCCACGC GCCGTTCCGC CCAGCCTTCA
  GTCCCGCCTG TCAGAGCCGG TTCTTGCGCT CTCTTTTGCC TCTCTGTGTC CCGGGGCCAC
  Y
  TCACGTTCCC CTCTCCCGCC GCTCCTGACT GAGGCTCGCT GCCTTGGTTT CACTTCTCGG
  GGCCTTTGCT CTCTACGAAG GGACGGGTAG TGTAGACCTA AAGTACGCGC TAGCCACAGC
  GTGCGGCCGT ACCCTCCCCT CCCCCCACGG GGCGCCGGGA CTACATTTCC CGGCGGGCGC
  TGCGACCAGA CTCTGGTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384861325	MGP_WTSI_11_116714849	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254835109					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384861325	MGP_WTSI_11_116714849	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116744361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4197	CpG island 4197	within coordinates
Mfsd11	major facilitator superfamily domain containing 11	within coordinates
Rr246191	regulatory region 246191	within coordinates
Rr403146	regulatory region 403146	240 bp downstream
Rr403147	regulatory region 403147	11 bp upstream
Srsf2	serine and arginine-rich splicing factor 2	441 bp upstream
Tssr106000	transcription start site region 106000	1315 bp downstream
Tssr106001	transcription start site region 106001	961 bp downstream
Tssr106002	transcription start site region 106002	263 bp downstream
Tssr106003	transcription start site region 106003	54 bp downstream
Tssr106004	transcription start site region 106004	217 bp upstream
Tssr112005	transcription start site region 112005	1382 bp upstream
Tssr112006	transcription start site region 112006	1343 bp upstream
Tssr112007	transcription start site region 112007	1277 bp upstream
Tssr112008	transcription start site region 112008	1171 bp upstream
Tssr112009	transcription start site region 112009	1079 bp upstream
Tssr112010	transcription start site region 112010	436 bp upstream