rs254842228 SNP Detail

Summary

• ID
  rs254842228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61926143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGGGTCC TTGGTAGAAG
  TTGCCAGAAG TTTATGGAAA TAGTAATGAA ATCTTGACTA CGTATGCCCA GGCTGCCCCC
  TGCAGGGAGT TTCTTATGTC AAAGTATTGG CTAGGGAACC CATTTGGCCA GGTTCCTCCT
  TCCCTGCAAG AACATCTGGG CTCCTGAATG GGAAGACTGC CAGGGTAACA GCACTTGCTG
  Y
  CGCAGAGGCA TAGACATTTA AAAAATCAAA TGACATCCTG GCAGAGATAG TGCATGCCTT
  TAATTCCTGC ACTCAGGAGG CAGAGCCAGG AGGATTTCTG CATCTGAGGT CTACAGAGAG
  AGAGAGAGTT CCAGGTCAGC CAGAGCTACA CAGAGAAACT CAGTCTTGAA AAAAAAAAAA
  AACCCAAAAA ACAAAAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325645769	CHEV_18_61952726	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254842228					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61926143 () rs orientation: forward

Symbol	Name	Function Class
Gm35919	predicted gene, 35919	1781 bp downstream
Rr346544	regulatory region 346544	within coordinates
Rr346545	regulatory region 346545	458 bp proximal
Rr351728	regulatory region 351728	within coordinates
Rr354902	regulatory region 354902	743 bp distal
Rr356351	regulatory region 356351	622 bp proximal