rs254842500 SNP Detail

Summary

• ID
  rs254842500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:158725259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCTTGT AATTATAAAG
  TTACACACAT GCATGCTCAA GACCCAACTA TAGTGTTCCA TGGCTGTGTA CCCTGTAGAA
  TCCCCTGGCC TACTCTGGAC TGTAACATGT AGTTATCATG CCTTATGGAC CTGCAGTGGT
  CTGTATGTCT ATCCCATCCA TACTGCGAGC CTTTCCAGAG TAGTTCCTTC CCACTTTAGC
  Y
  CTCCCCATAC TCTTAGCAGA CTAGGCACCA GACAAATGTT TGGGAGAATA AATTTGTTCC
  TAGTAAAGTT TGAGTTCGGG CCATGGTGAC TTTCAAAAGC TGTGAGATGG ACTATTTCTA
  TTGATTTGAT AGGAACAACT GTTCAGCTCT CTCATGTCAT GGTGAGGATC AGCCCTTGAA
  TAACCTTATT TAGGACTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss405009497	MGP_WTSI_X_156380195	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254842500					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss405009497	MGP_WTSI_X_156380195	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:158725259 () rs orientation: forward

Symbol	Name	Function Class
Rr694730	regulatory region 694730	262 bp proximal
Sh3kbp1	SH3-domain kinase binding protein 1	within coordinates
Tssr162525	transcription start site region 162525	1816 bp downstream
Tssr162526	transcription start site region 162526	551 bp downstream
Tssr162527	transcription start site region 162527	420 bp upstream
Tssr162528	transcription start site region 162528	581 bp upstream
Tssr162529	transcription start site region 162529	626 bp upstream
Tssr162530	transcription start site region 162530	642 bp upstream
Tssr162531	transcription start site region 162531	659 bp upstream
Tssr162532	transcription start site region 162532	685 bp upstream
Tssr162533	transcription start site region 162533	717 bp upstream
Tssr162534	transcription start site region 162534	737 bp upstream
Tssr162535	transcription start site region 162535	783 bp upstream
Tssr162536	transcription start site region 162536	828 bp upstream