rs254846472 SNP Detail

Summary

• ID
  rs254846472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128583770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGCGCTC CTTCCAAGAA
  CAAGGCACAA CCTAACAAAG GGAGTGGCCT CACTGTCCCG GTAGATTTAA GGGTGGAACT
  GCTCGCGGTA GCCAAAGCTA ATCCGAAGTG TGGGGCGCGG CTAATTAGAA TACTGACTGG
  GTCCGCCCCA AAAGCCTTCA CCCCGTGCCC TCTGACCCGA GAGGATCCAG TACTGAGCAG
  Y
  AGGCCAAGAA GTTACCTCGC CGGCCGCTGA ATCCCCAGGG CTGCCCGCCC CAGTTCAGTC
  ATGGAAACCG CCAGCACCCC CGAGGCCACG GGGACAGGTG ACCGACTCGC AGTGCGCCGA
  TCTTTGCGCA CCCCTTCGTA GGTCTCTGAT CAGTTAACCT GGGCGGCCGA GAGTGGTCGG
  CGTGCCGAGT AGACCTGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210119	MGP_WTSI_10_128184957	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254846472					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210119	MGP_WTSI_10_128184957	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128583770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	within coordinates
Gm66065	predicted gene, 66065	1552 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	within coordinates
Rr224483	regulatory region 224483	1569 bp distal
Rr224484	regulatory region 224484	within coordinates
Rr385481	regulatory region 385481	within coordinates
Tssr96443	transcription start site region 96443	1427 bp downstream
Tssr96444	transcription start site region 96444	102 bp downstream
Tssr96445	transcription start site region 96445	6 bp downstream
Tssr96446	transcription start site region 96446	600 bp upstream
Tssr96447	transcription start site region 96447	850 bp upstream
Tssr99956	transcription start site region 99956	1649 bp upstream
Tssr99957	transcription start site region 99957	1589 bp upstream
Tssr99958	transcription start site region 99958	256 bp upstream
Tssr99959	transcription start site region 99959	157 bp upstream