rs254848757 SNP Detail

Summary

• ID
  rs254848757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9960412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGCCTCGC CCCGCCGCCA
  CCATGACCAC CGCGTCTCCC TCGCAAGTGC GCCAGAACTA CCACCAGGAC GCGGAGGCTG
  CCATCAACCG CCAGATCAAC CTGGAGTTGT ATGCCTCCTA CGTCTATCTG TCTATGGTGA
  GTGCGGCCTC CTCAGGGCCA CTTGGGGAGC CGGCGGAGGG TGGGTCGGGG CGTGGCCTGC
  Y
  GCGGGCTTCC CCGCCTTCCA GCGCCCTTCT GGAAAATGGA GTTTGTTCGG GGTTCTTTCC
  TAAGGCAGGC AGCCCTGCCG TGGCAAGTCT GAGCACATAG CACCTTGTGG CTCCTGCATA
  GATCAGGCAT GTCATTACAC CACTTTTTTT TGAAGCCTTA GGGCAGTACG ACTGTCAGCC
  TGGCCAATCA ACCCTGCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401720044	MGP_WTSI_19_10057538	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254848757					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401720044	MGP_WTSI_19_10057538	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9960412 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10595	CpG island 10595	within coordinates
Fth1	ferritin heavy polypeptide 1	within coordinates
Gm36913	predicted gene, 36913	528 bp upstream
Rr543964	regulatory region 543964	541 bp distal
Rr543965	regulatory region 543965	315 bp distal
Rr543966	regulatory region 543966	within coordinates
Rr543967	regulatory region 543967	1283 bp proximal
Tssr155003	transcription start site region 155003	337 bp downstream
Tssr155004	transcription start site region 155004	196 bp downstream
Tssr155005	transcription start site region 155005	40 bp upstream
Tssr155006	transcription start site region 155006	1130 bp upstream
Tssr155007	transcription start site region 155007	1199 bp upstream
Tssr155008	transcription start site region 155008	1509 bp upstream
Tssr155009	transcription start site region 155009	1855 bp upstream
Tssr158131	transcription start site region 158131	613 bp upstream
Tssr158132	transcription start site region 158132	599 bp upstream
Tssr158133	transcription start site region 158133	542 bp upstream
Tssr158134	transcription start site region 158134	517 bp upstream
Tssr158135	transcription start site region 158135	481 bp upstream
Tssr158136	transcription start site region 158136	108 bp upstream
Tssr158137	transcription start site region 158137	1171 bp downstream
Tssr158138	transcription start site region 158138	1217 bp downstream
Tssr158139	transcription start site region 158139	1537 bp downstream
Tssr158140	transcription start site region 158140	1758 bp downstream
Tssr158141	transcription start site region 158141	1809 bp downstream
Tssr158142	transcription start site region 158142	1825 bp downstream
Tssr158143	transcription start site region 158143	1884 bp downstream