rs254861411 SNP Detail

Summary

• ID
  rs254861411
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40276687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCAGAGG AAGCATCCAA
  TCCCCTCCAG GGGGATTTTC CTGTATTGTG CCACCTGAAC CAGGGGCCCA GTTCTGGCTC
  CTCCAGTCCA GCAAGCAGCC TCCCCAACCT GCACCCAGGG CAAAGACCAG TTCTTACCCA
  TGTTTGTTTA TTCCTAGAGC TAAGCTCAAC GAATGCTCAA GAATTCTTAG TAGAGTGAAC
  R
  AATGCATAGT TAAATTAAAA CAGAATATAG TGGGAACTTG AAAAGAACTG TAGAAGCATT
  GTATTCTGAG GTTCATCAGC CCAAAAGGGG ACAGGGAAAT CTCAAGTGTG ATACTGCTAT
  CACCTTAGAG ATGAGGGTAT GTCCCGCTAA GGTCACACCC TTCCTTGTGA TTAAATACCA
  GAGCTAGTTC CAGCGTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322915582	CHEV_9_40172976	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254861411					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40276687 () rs orientation: forward

Symbol	Name	Function Class
Gm48114	predicted gene, 48114	within coordinates
Gm68184	predicted gene, 68184	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr194718	regulatory region 194718	114 bp proximal
Rr200102	regulatory region 200102	687 bp distal
Rr200103	regulatory region 200103	287 bp distal