rs254862447 SNP Detail

Summary

• ID
  rs254862447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178163222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATACACTT GTGTGCTAAT
  GGGAAAATCA GTAAGTATTC AACTAGCCCA AATAGCTCAC TTAACATAGT TCCACGAGAA
  AAAACTAAAT CATGTAATCT AAGGACAAGT TACAGGCAGG TTTTTAAAAA AACAAGTTTC
  TGATAGCCGA GCAAAAATTA TTTAGTTTTA CATCCCCCAA GTACTGAGAA GTTTCAACTC
  R
  TAAATATTAC CAATTACTAG AGCTTGTTAA ATCAATACAA CTGAAGTGGT ATTAATATTA
  AACTACTGTA GCCTGAGCAT TAAGCTACTA CCTTCCTGCT TTAAAATAAG TTTCTTAACT
  GGTTTTTTCC ACTTTAAGAT CAACACATTT TTCCTAACAC TTAAAACCAA TGTTAACACT
  GCACTTGAAA ACTAGCAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352535454	MGP_WTSI_1_180265788	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254862447					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352535454	MGP_WTSI_1_180265788	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178163222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	672 bp proximal
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	within coordinates
Rr29068	regulatory region 29068	within coordinates
Rr372516	regulatory region 372516	1405 bp upstream
Tssr316	transcription start site region 316	1412 bp downstream
Tssr317	transcription start site region 317	1930 bp downstream
Tssr10384	transcription start site region 10384	249 bp upstream
Tssr10385	transcription start site region 10385	446 bp upstream
Tssr10386	transcription start site region 10386	552 bp upstream
Tssr10387	transcription start site region 10387	1425 bp upstream
Tssr10388	transcription start site region 10388	1635 bp upstream
Tssr15479	transcription start site region 15479	1691 bp upstream
Tssr15480	transcription start site region 15480	1092 bp upstream
Tssr15481	transcription start site region 15481	411 bp downstream
Tssr15482	transcription start site region 15482	488 bp downstream
Tssr15483	transcription start site region 15483	740 bp downstream
Tssr15484	transcription start site region 15484	1443 bp downstream
Tssr15485	transcription start site region 15485	1502 bp downstream
Tssr15486	transcription start site region 15486	1583 bp downstream
Tssr15487	transcription start site region 15487	1634 bp downstream
Tssr15488	transcription start site region 15488	1991 bp downstream