rs254868476 SNP Detail

Summary

• ID
  rs254868476
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115654553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGTGCT GGGATTAAAA
  GCATGTGCCA GATTCCCTCT TAATTTGAGG CTGGCCTCAG ACTCTGGTTC TCCTACCTCT
  GTGTAAGTAT TTTCCAAGTA GCCATTTGGG GACCCGCAAG GTGACTCAGA GAGTAAAAAG
  TGTGCAGAGT AAAACCTGAT GGAAGAGAGA ACAGGCTCCT GAAAGTTATC CTCTGACCTC
  S
  ATTCGAACCC GGTGCTACGT GCGCAACCTG CAACCGCATT TACAAATACA CAGACAAGTT
  TTTTTTTGTT TTTTTTAAGT AACCATTTAT AAGTAAACAT CTTTTGGCAT TTAGTGCGTT
  CACAGTATTG TGTAACCACA ACTTTGGTTC CAAAACATTT CCATTACTCT GAAATAAAAT
  TACCCACTAA GCAGTTTAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369757470	MGP_WTSI_6_115627610	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254868476					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369757470	MGP_WTSI_6_115627610	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115654553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17873	CpG island 17873	525 bp distal
D830050J10Rik	RIKEN cDNA D830050J10 gene	within coordinates
Raf1	v-raf-leukemia viral oncogene 1	957 bp upstream
Rr399847	regulatory region 399847	926 bp downstream
Rr637016	regulatory region 637016	1639 bp distal
Rr637017	regulatory region 637017	1587 bp distal
Rr637018	regulatory region 637018	968 bp distal
Rr637019	regulatory region 637019	467 bp distal
Tssr58320	transcription start site region 58320	1636 bp downstream
Tssr58321	transcription start site region 58321	1588 bp downstream
Tssr58322	transcription start site region 58322	838 bp downstream
Tssr62522	transcription start site region 62522	1705 bp upstream
Tssr62523	transcription start site region 62523	1014 bp upstream
Tssr62524	transcription start site region 62524	974 bp upstream
Tssr62525	transcription start site region 62525	950 bp upstream