rs254878479 SNP Detail

Summary

• ID
  rs254878479
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:7347563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTACTAG GGTTATATAA
  AGTGGGGCTT TAAGGGAACT TGCAGTCGGA GGGAACAGGT TGATGAGCTG CACTCTGCTG
  AAAGGAGTCT GCACAATGAA ATTTCTCATG ATGATTGTGT TCTTACAGGT ATCTGCCTGT
  GGGGCTGCTC CCATGAATGA CAGTGAATTT GCTGAAGTAA GTATTGACAG CATTGCTCTG
  S
  TCCAGCCTGA CTGTATCTTT AATAGTTGCT GAATTTGCAA ATAGTATGTT GAAAAGTGTG
  ATTCGATTTG AAAATCAGTA CAGATTCTCT CTTGTTACCA TGTTTTGTTT TCCAGAGAGG
  ATTATAAAGA TGAAAGAATG TCATTAAACT GGTGAATAAT TGTACCATCT ACAAAAAGCT
  TTGGCTAAAT TACTTTAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560228	MGP_WTSI_9_7347563	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254878479					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560228	MGP_WTSI_9_7347563	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7347563 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mmp12	matrix metallopeptidase 12			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr83683	transcription start site region 83683			1409 bp downstream
Tssr83684	transcription start site region 83684			153 bp downstream
Tssr83685	transcription start site region 83685			90 bp downstream
Tssr83686	transcription start site region 83686			41 bp downstream
Tssr83687	transcription start site region 83687			23 bp downstream
Tssr83688	transcription start site region 83688			640 bp upstream
Tssr83689	transcription start site region 83689			1005 bp upstream
Tssr83690	transcription start site region 83690			1041 bp upstream
Tssr83691	transcription start site region 83691			1060 bp upstream
Tssr83692	transcription start site region 83692			1091 bp upstream
Tssr83693	transcription start site region 83693			1127 bp upstream
Tssr83694	transcription start site region 83694			1153 bp upstream
Tssr83695	transcription start site region 83695			1225 bp upstream
Tssr83696	transcription start site region 83696			1280 bp upstream
Tssr83697	transcription start site region 83697			1339 bp upstream
Tssr83698	transcription start site region 83698			1494 bp upstream
Tssr83699	transcription start site region 83699			1544 bp upstream
Tssr83700	transcription start site region 83700			1592 bp upstream
Tssr83701	transcription start site region 83701			1637 bp upstream
Tssr83702	transcription start site region 83702			1674 bp upstream
Tssr88064	transcription start site region 88064			1127 bp downstream
Tssr88065	transcription start site region 88065			1228 bp downstream