rs254880931 SNP Detail

Summary

• ID
  rs254880931
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10108009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACCCTTC ATCTCCCACC
  CCTCGCGGGT CTCTCACAGT CCCGCCATCC CTGCCCTCCC CTGCGTCTCG CCAGGGACCT
  CCTCACTCCT TAGTCCAGGG TTTCGCCGCC AGGATTTCTT GTTGTTGTTT TTTGTCATAT
  TTGTAGATTT CATCGATACT CTGCGCTTCC TGCATGTTGT TGGCCAATTC CCAGGTTTTC
  T
  GGGCCATACC ACTCCCGGAA GCTGCCATGG CCGAGGCACC GGAGAAGCTG TCGCTCCACA
  ATCAAGATGC AACTTTCTTC TACTGGGCCT CAGCGTGCGG GCTTTGGACC TTCCCCACCA
  GGGTGCACAC TCACTAGACT CTCAAGGCAG CCATGACACT TGAGACCGGA GGTGACGTTG
  GTCCAGACCA TTCGCGCGCT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348594587	MGP_WTSI_1_10027865	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254880931					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348594587	MGP_WTSI_1_10027865	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10108009 () rs orientation: forward

Symbol	Name	Function Class
Cops5	COP9 signalosome subunit 5	within coordinates
Cpgi31	CpG island 31	within coordinates
Cpgi32	CpG island 32	1737 bp proximal
Cspp1	centrosome and spindle pole associated protein 1	203 bp upstream
Rr407692	regulatory region 407692	111 bp proximal
Rr407693	regulatory region 407693	333 bp proximal
Rr407694	regulatory region 407694	489 bp proximal
Rr407695	regulatory region 407695	1499 bp proximal
Rr407696	regulatory region 407696	1892 bp proximal
Tssr4	transcription start site region 4	424 bp upstream
Tssr5924	transcription start site region 5924	1978 bp upstream
Tssr10955	transcription start site region 10955	99 bp downstream
Tssr10956	transcription start site region 10956	138 bp downstream
Tssr10957	transcription start site region 10957	148 bp downstream
Tssr10958	transcription start site region 10958	322 bp downstream