rs254882781 SNP Detail

Summary

• ID
  rs254882781
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110680243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGGAAGT CTTTAATCAA
  ATCGACAGTT TTAAGTTAAC TGTCTTTACA AGTTTTACCA TACCTGTTGC CAGCAGTCTT
  GGGATAGTGC TGAGGTGCAC CCCTACTTCC TCCTCCGCCC GAAGAAGCAC TATTCAAAAG
  AAAATTTTTA CTATACCAAT TATGCCTCAC TTGGAAGGGA ACCTATTTAT ATTTTAGAAA
  Y
  TGCGTAACAA AGTGAACTTT GGCCTAAAAG AAAGTGAACT GGAGGCTAGA GATGGCTCAG
  ATATTCAAAG CAGTTCAGTT CCTAACATCC ACATGGCAGC TCACAACTCC AGTCTCAGAG
  GATCTGATGC CCTCTTCTGA CACTGTACAC AGAAATGTAT GCAGACATAC ATTCAGACAA
  AATAATCCCC CACCCCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322401266	CHEV_7_118224550	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254882781					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110680243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19582	CpG island 19582	935 bp proximal
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Gm57201	predicted gene, 57201	1529 bp upstream
Rr166519	regulatory region 166519	1042 bp distal
Rr166520	regulatory region 166520	within coordinates
Rr381309	regulatory region 381309	64 bp upstream
Tssr2372	transcription start site region 2372	714 bp upstream
Tssr68538	transcription start site region 68538	843 bp downstream
Tssr74294	transcription start site region 74294	1699 bp upstream
Tssr74295	transcription start site region 74295	723 bp upstream
Tssr74296	transcription start site region 74296	90 bp upstream
Tssr74297	transcription start site region 74297	560 bp downstream
Tssr74298	transcription start site region 74298	990 bp downstream
Tssr74299	transcription start site region 74299	1179 bp downstream
Tssr74300	transcription start site region 74300	1411 bp downstream
Tssr74301	transcription start site region 74301	1493 bp downstream
Tssr74302	transcription start site region 74302	1572 bp downstream
Tssr74303	transcription start site region 74303	1961 bp downstream