rs254885384 SNP Detail

Summary

• ID
  rs254885384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172188792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCTGACTA CCAGTAGTGT GCCCCCCCGC
  CCTATACTGT CTCTTCTCTA GCGCTCAGAT CTTAGCTGCC TTCACGATCT GGTACAACCT
  CTCACCTTGT TCTGCCACAT CAGCCCTGTT GGTAGcctaa ccctaaccct aaccctaacc
  Y
  taaACACACA CTCTGCCTTG ACAGGTGTGT TTACAGCAAG GATAAGTCTG GTCTCAGGCT
  CATAGGATCC ATGTCTCTGC TTGCTAAGTC AATCACTTTG ATCAAACGCT ATCCCTTTTC
  CATGTCTGTA AAATGAGATG TTACTAAGTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320618218	CHEV_2_172172372	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254885384					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172188792 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	489 bp distal
Fam210b	family with sequence similarity 210, member B	within coordinates
Rr56171	regulatory region 56171	within coordinates
Tssr21944	transcription start site region 21944	1282 bp downstream
Tssr21945	transcription start site region 21945	1246 bp downstream
Tssr21946	transcription start site region 21946	1225 bp downstream
Tssr27939	transcription start site region 27939	1189 bp upstream