rs254887606 SNP Detail

Summary

• ID
  rs254887606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84493268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTTCGA GTCCAAGTGC
  TCGGAGGGGC CTCCAAGTCT GCCGCAGTGT CGCCCTCCCC AACCGGTGGC CCCCGCTGTG
  CCTTTCCCAA CCCCTCGCGG GCGCCCCCTT GCCTCAGTCG TCGGAGATGG AGAGGCGGCT
  GAAGATGGGT AGGCGACGGC CAGGGTCCAG GCTGGGGGAC TCGGAGCCGC TGAGGCTGCC
  R
  GAGCTCAGCG AGCCGCTCAG GTAGCTGTCG CGGTCCGAGA GCGAGTCCGG GGGGCTGGGG
  GGCGCGTCGA ACACGGGCGA CTCGGACAGA CGGCGCGGCA GCTGGAAGCC GAAGGGCGGG
  GAGGGCGGCG CGGGGGCCGC GGGGGGCTGT GCCGGGGGTG GCGCGGGACC GGTCAGGCCC
  TGCTGCTGGT TGCGGTAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399282268	MGP_WTSI_17_84585180	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254887606					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399282268	MGP_WTSI_17_84585180	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84493268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	within coordinates
Cpgi9566	CpG island 9566	1771 bp proximal
Rr340271	regulatory region 340271	within coordinates
Tssr146044	transcription start site region 146044	79 bp downstream
Tssr146045	transcription start site region 146045	1250 bp upstream
Tssr149650	transcription start site region 149650	253 bp upstream
Tssr149651	transcription start site region 149651	199 bp upstream
Tssr149652	transcription start site region 149652	147 bp downstream
Tssr149653	transcription start site region 149653	195 bp downstream
Tssr149654	transcription start site region 149654	335 bp downstream
Tssr149655	transcription start site region 149655	431 bp downstream
Tssr149656	transcription start site region 149656	521 bp downstream
Tssr149657	transcription start site region 149657	737 bp downstream
Tssr149658	transcription start site region 149658	794 bp downstream
Tssr149659	transcription start site region 149659	829 bp downstream
Tssr149660	transcription start site region 149660	860 bp downstream
Tssr149661	transcription start site region 149661	909 bp downstream
Tssr149662	transcription start site region 149662	968 bp downstream
Tssr149663	transcription start site region 149663	1032 bp downstream
Tssr149664	transcription start site region 149664	1073 bp downstream
Tssr149665	transcription start site region 149665	1118 bp downstream
Tssr149666	transcription start site region 149666	1187 bp downstream
Tssr149667	transcription start site region 149667	1276 bp downstream
Tssr149668	transcription start site region 149668	1331 bp downstream
Tssr149669	transcription start site region 149669	1364 bp downstream
Tssr149670	transcription start site region 149670	1897 bp downstream
Tssr149671	transcription start site region 149671	1987 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates