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rs254887606 SNP Detail
Summary
  • ID
    rs254887606
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr17:84493268 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAGAGTTCGA GTCCAAGTGC
    TCGGAGGGGC CTCCAAGTCT GCCGCAGTGT CGCCCTCCCC AACCGGTGGC CCCCGCTGTG
    CCTTTCCCAA CCCCTCGCGG GCGCCCCCTT GCCTCAGTCG TCGGAGATGG AGAGGCGGCT
    GAAGATGGGT AGGCGACGGC CAGGGTCCAG GCTGGGGGAC TCGGAGCCGC TGAGGCTGCC
    R
    GAGCTCAGCG AGCCGCTCAG GTAGCTGTCG CGGTCCGAGA GCGAGTCCGG GGGGCTGGGG
    GGCGCGTCGA ACACGGGCGA CTCGGACAGA CGGCGCGGCA GCTGGAAGCC GAAGGGCGGG
    GAGGGCGGCG CGGGGGCCGC GGGGGGCTGT GCCGGGGGTG GCGCGGGACC GGTCAGGCCC
    TGCTGCTGGT TGCGGTAGTA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss399282268 MGP_WTSI_17_84585180 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs254887606 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss399282268 MGP_WTSI_17_84585180 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84493268 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9565 CpG island 9565 within coordinates
Cpgi9566 CpG island 9566 1771 bp proximal
Rr340271 regulatory region 340271 within coordinates
Tssr146044 transcription start site region 146044 79 bp downstream
Tssr146045 transcription start site region 146045 1250 bp upstream
Tssr149650 transcription start site region 149650 253 bp upstream
Tssr149651 transcription start site region 149651 199 bp upstream
Tssr149652 transcription start site region 149652 147 bp downstream
Tssr149653 transcription start site region 149653 195 bp downstream
Tssr149654 transcription start site region 149654 335 bp downstream
Tssr149655 transcription start site region 149655 431 bp downstream
Tssr149656 transcription start site region 149656 521 bp downstream
Tssr149657 transcription start site region 149657 737 bp downstream
Tssr149658 transcription start site region 149658 794 bp downstream
Tssr149659 transcription start site region 149659 829 bp downstream
Tssr149660 transcription start site region 149660 860 bp downstream
Tssr149661 transcription start site region 149661 909 bp downstream
Tssr149662 transcription start site region 149662 968 bp downstream
Tssr149663 transcription start site region 149663 1032 bp downstream
Tssr149664 transcription start site region 149664 1073 bp downstream
Tssr149665 transcription start site region 149665 1118 bp downstream
Tssr149666 transcription start site region 149666 1187 bp downstream
Tssr149667 transcription start site region 149667 1276 bp downstream
Tssr149668 transcription start site region 149668 1331 bp downstream
Tssr149669 transcription start site region 149669 1364 bp downstream
Tssr149670 transcription start site region 149670 1897 bp downstream
Tssr149671 transcription start site region 149671 1987 bp downstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory