rs254888514 SNP Detail

Summary

• ID
  rs254888514
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19280499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGCTGAG CTCAAGAGGA
  AAGGAAAGTA AGGCTCAAGG GGACGTCGAG AGAGGGAAGG CAGACTCCGA AGCTCCAAGA
  TATCTGAGGA TCGGGATTAA AAAAAAAAAA AAAAAAAAAA AGCGAAAGGG GTTTAGCGAA
  GAGGGAAGCA GAGGCGGGGG AAGAAAAGTT GGAAAGCTAC CCGCAGCAGC ACAGCAGCAC
  R
  AGGCTGGGCC ACCGGGCAGA GGTGGACAAC CCAGACTCAG TAACCGGTTC TGAAAGAAAT
  CTGAACCGTG AGCCTTGTAG GTGTTGGGAC AGCACCGCGG TGTTAGCCTT GCTCAGCTAA
  GAAGAGTCCG GAGGCAGGCG CTAGCTCTGT CCCTACCGCT CTTAACTGGG TCCGGTGTGT
  GGCCGCGACT CCTCAGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348817518	MGP_WTSI_1_19200356	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254888514					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348817518	MGP_WTSI_1_19200356	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19280499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	within coordinates
Rr408238	regulatory region 408238	1305 bp distal
Rr408239	regulatory region 408239	within coordinates
Rr408240	regulatory region 408240	1289 bp proximal
Rr408241	regulatory region 408241	1790 bp proximal
Tfap2b	transcription factor AP-2 beta	within coordinates
Tssr6030	transcription start site region 6030	1308 bp downstream
Tssr6031	transcription start site region 6031	1281 bp downstream
Tssr6032	transcription start site region 6032	1264 bp downstream
Tssr6033	transcription start site region 6033	1242 bp downstream
Tssr6034	transcription start site region 6034	1222 bp downstream
Tssr6035	transcription start site region 6035	1186 bp downstream
Tssr6036	transcription start site region 6036	1174 bp downstream
Tssr6037	transcription start site region 6037	1149 bp downstream
Tssr6038	transcription start site region 6038	1122 bp downstream
Tssr6039	transcription start site region 6039	1098 bp downstream
Tssr6040	transcription start site region 6040	1829 bp upstream
Tssr6041	transcription start site region 6041	1996 bp upstream