rs254890971 SNP Detail

Summary

• ID
  rs254890971
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:80071271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTTTTT TTTTTTTTTT
  TTTGGTTTTT CAAGACAGGG TTTCTCTTTA TAGCCCTGGC TGTCCTGGAG CTCACTCTGT
  AGACCAGGCT GGCCTCGAAC TCAGAAATCC GCCTGTCTCT GCCTCCCGAG TGCTGGGATT
  AAAGGCGTGC GCCACCACGC CCGGCTTATG GCCAATTTTT AAATGGTTCA ATTGAAAAAA
  M
  ATCAGATATA CATATGTATA TATGTACATG AATGGAATGT ATGTGTGTGT ATTTCTGTAT
  CTATATACAG AGAGCATACC ACTGATGAGT CTAGATGAAA TGTAAATGGA CATTTATTTT
  CCTATTTGTG AACATTTTAT ATAGATTTGA GTTTTCATAT TAAAACATTG ATAAAACATC
  CAGGCTTCAC TCTTCAAAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383995248	MGP_WTSI_11_79993947	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254890971					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383995248	MGP_WTSI_11_79993947	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:80071271 () rs orientation: forward

Symbol	Name	Function Class
Adap2	ArfGAP with dual PH domains 2	1487 bp downstream
D11Bhm113	DNA segment, Chr 11, Boehm 113	542 bp proximal
Rr386348	regulatory region 386348	320 bp upstream
Rr452448	regulatory region 452448	594 bp distal
Rr452449	regulatory region 452449	1118 bp proximal
Tssr103501	transcription start site region 103501	1878 bp downstream
Tssr103502	transcription start site region 103502	1780 bp downstream
Tssr103503	transcription start site region 103503	1721 bp downstream
Tssr103504	transcription start site region 103504	1684 bp downstream
Tssr103505	transcription start site region 103505	1587 bp downstream
Tssr103506	transcription start site region 103506	1271 bp downstream
Tssr103507	transcription start site region 103507	1110 bp downstream
Tssr103508	transcription start site region 103508	1077 bp downstream