rs254891548 SNP Detail

Summary

• ID
  rs254891548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23716749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATACTTT TCCTCATTGT
  TCAGCCTTCT GACTGTTTCT CGTCATCGTC ATCATGATAC CACCACCACT TTTTTTTCTT
  TTTCTTTTTT GAGACCGTGT TTCTCTGGGT AGCACTAGAT GCCCTTGAAC TCTGTGGACC
  CGGCTGGCCT CGAACTCCAG ATATACCCTT GCCTCTGCCT CCCGAGTGCT GGGATTAAAG
  R
  CCTACCCCAG CACCTCCTGT TTCTCATCTT TACTTTTAAA GATTAGGGTT TCTGTGGGTA
  AGCGAAAAGT ATCATATACT AATGGAGGTT AAGAAGTTGT TTGAAGAAGA AAATAATCTG
  AGGCTTGAAA AGAGTAATCT GAACACAACA TGTGTCAGCA ACTGTTCTGA GTTCTGGAAT
  TTATAAGTAT GAATAATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387984332	MGP_WTSI_13_23624448	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254891548					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387984332	MGP_WTSI_13_23624448	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23716749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5358	CpG island 5358	705 bp distal
Gm11335	predicted gene 11335	1651 bp upstream
Gm55640	predicted gene, 55640	1535 bp downstream
Gm60769	predicted gene, 60769	942 bp downstream
H2ac10	H2A clustered histone 10	1327 bp upstream
H4c8	H4 clustered histone 8	1101 bp downstream
Rr281120	regulatory region 281120	within coordinates
Rr403647	regulatory region 403647	1062 bp upstream
Tssr4007	transcription start site region 4007	1106 bp downstream
Tssr118826	transcription start site region 118826	1491 bp downstream
Tssr118827	transcription start site region 118827	726 bp downstream
Tssr118828	transcription start site region 118828	1290 bp upstream
Tssr121710	transcription start site region 121710	1636 bp upstream
Tssr121711	transcription start site region 121711	1613 bp upstream
Tssr121712	transcription start site region 121712	1077 bp downstream