rs254894629 SNP Detail

Summary

• ID
  rs254894629
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94901667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATCCCTAG GGAGACCTCA CTGGAGGGGG
  GAGCTGGGCT GTCGGGAGGG AGCAGAAATA GGGTTTGTGT CCCTAATCCC ATTTCTCCCG
  CCTGAGGAAA TTAATAagag agagaggaga gaaagggaga gagagagaga gagagagaga
  S
  agagagagag agagagagag agagaagaga agagaagaga agagaagaga agagaagaga
  agagaagaga agagaagaga agagaagaga agagaagaga agagaagaga agagaagaga
  agaggagagg aaagaaTGAA GAGAAAAAGA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323817421	CHEV_11_94872155	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254894629					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94901667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	180 bp distal
Gm36385	predicted gene, 36385	590 bp upstream
Gm51875	predicted gene, 51875	1507 bp upstream
Gm72634	predicted gene, 72634	within coordinates
Rr250	regulatory region 250	1481 bp proximal
Rr454923	regulatory region 454923	1498 bp distal
Rr454924	regulatory region 454924	952 bp distal
Rr454925	regulatory region 454925	601 bp distal
Rr454926	regulatory region 454926	100 bp distal
Rr454927	regulatory region 454927	139 bp proximal
Rr454928	regulatory region 454928	1047 bp proximal
Samd14	sterile alpha motif domain containing 14	within coordinates
Tssr104328	transcription start site region 104328	1059 bp downstream
Tssr104329	transcription start site region 104329	951 bp downstream
Tssr104330	transcription start site region 104330	922 bp downstream
Tssr104331	transcription start site region 104331	894 bp downstream
Tssr104332	transcription start site region 104332	878 bp downstream
Tssr104333	transcription start site region 104333	812 bp downstream
Tssr104334	transcription start site region 104334	755 bp downstream
Tssr104335	transcription start site region 104335	726 bp downstream
Tssr104336	transcription start site region 104336	656 bp downstream
Tssr104337	transcription start site region 104337	565 bp downstream
Tssr104338	transcription start site region 104338	548 bp downstream
Tssr104339	transcription start site region 104339	476 bp downstream
Tssr104340	transcription start site region 104340	462 bp downstream
Tssr104341	transcription start site region 104341	422 bp downstream
Tssr104342	transcription start site region 104342	358 bp downstream
Tssr110238	transcription start site region 110238	516 bp upstream
Tssr110239	transcription start site region 110239	1351 bp downstream