rs254902092 SNP Detail

Summary

• ID
  rs254902092
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47449703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAGACA TGCTTTCCCA
  GTGTGGGGTT TGCCACACAT ATGTACAAGG TGTCCTGCCG GCTAACCATG CTGGAATGCC
  TCTTTCACAA CACTTGCCCT TCCAGGATGG GGTATCTACT ATACAAGAGG TATAGAAAAA
  AAAAAAAAAA CAAAACTGCC CGAGAGCCCT CCTGAACTCT TTCAATTATT GGGCACCAGT
  R
  TATTATATAT CAGTGCTCAA ACTGTGTAGC AGTGTATCTC TCTTCTTTGT CAACTTCAAC
  CAGATTTGGG GTATCTTCAC CCACACCACA GGCTGGAAGT CCGTCCGTTA GCCCCAGTGC
  TGTGACTAGG TAACCCACCT GCTTCTCTGT CATCCCCTTA TCTGTTAAGT AAAAGGTTGC
  ACCAGATGAG CCATCTGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325826241	CHEV_19_47535754	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254902092					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47449703 () rs orientation: forward

Symbol	Name	Function Class
Gm52384	predicted gene, 52384	1541 bp downstream
Rr549061	regulatory region 549061	320 bp distal
Rr549062	regulatory region 549062	410 bp distal
Rr549063	regulatory region 549063	177 bp proximal
Rr549064	regulatory region 549064	766 bp proximal
Rr549065	regulatory region 549065	1903 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	641 bp upstream
Tssr159730	transcription start site region 159730	497 bp upstream