rs254903707 SNP Detail

Summary

• ID
  rs254903707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157121792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGAGC CACCCCTGGC
  ATCATGAAAG CTTTTGAGCA TGTCACTAGA CTTTCTTCGA CTTCTAGGTT CCTTTTCCCT
  GACAGGGACA GGAGACTCAC AGGTCTGTCT GGGAGCTGAA AGCCTAGGGT ATGAAGTGAT
  ATTACGGGTG CAGACTTGTA ACCGGCCACG TATTGATTGT GAGAACAGAA GCCAGGGACT
  Y
  AACAGCTTAG TTTCTCATCT GGTATCTGCT TCGCAAGAGT TGTGTTAAAT GATATTTCTG
  TGCTTGCTTT TAACAGTGCC GGGCAAAACT CAATGCTTGG TAGATTCTGA GTGGATAGGT
  GGGAATCTTA GTGTATTCAA GTCACTATTT TATTTGTTGG TAAAGTGGCT AAAGTCAGAA
  CTTGCATTGA AACTTAAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356255575	MGP_WTSI_2_157105608	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254903707					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356255575	MGP_WTSI_2_157105608	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157121792 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	33 bp distal
Mroh8	maestro heat-like repeat family member 8	323 bp upstream
Rpn2	ribophorin II	within coordinates
Rr397441	regulatory region 397441	823 bp downstream
Rr568459	regulatory region 568459	716 bp distal
Rr568460	regulatory region 568460	within coordinates
Tssr21228	transcription start site region 21228	847 bp downstream
Tssr21229	transcription start site region 21229	808 bp downstream
Tssr21230	transcription start site region 21230	742 bp downstream
Tssr21231	transcription start site region 21231	555 bp downstream
Tssr27165	transcription start site region 27165	354 bp upstream
Tssr27166	transcription start site region 27166	317 bp upstream
Tssr27167	transcription start site region 27167	294 bp upstream