rs254906189 SNP Detail

Summary

• ID
  rs254906189
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72537816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTGTGT GTGTGATGGG
  CCTCTCTTTC CAGTGATGGC CGACTAGGGC ATCTTTTGAT ACATATGCAG CTAAAGTCAA
  GAGCTCCGGG GTACTGGTTA GTTCATAATG TTGTTGCACC TACAGGGTTG CAGATCTCTT
  TAGCTCCTTA GATACTTTCT CTAGCTCGGC ACTGTCTTTC CTACACAGAT ATCATGTCAG
  R
  ATCAAAGTTT GCTTTGTTTT ACAGCATCAT TCTACCAAAC ACAGCCTCCA CCCCACCCAT
  CCCAACTCAC CACTCGTTTA TACACTGCAC TTGAGCCCTT CATCCTGACC TGAGTCCAGC
  CAAATACCTG TGCCCTAATC AGAGCTTACA CCCACTAACA TACTCCGGTA TGCCCTCCTC
  TCAACCCTGA GAAGAATCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771584	MGP_WTSI_X_70739549	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254906189					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771584	MGP_WTSI_X_70739549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72537816 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	216 bp distal
Rr6090	regulatory region 6090	816 bp distal
Rr7747	regulatory region 7747	757 bp proximal
Rr10758	regulatory region 10758	289 bp distal
Tssr5633	transcription start site region 5633	933 bp downstream
Tssr5634	transcription start site region 5634	487 bp downstream
Tssr5635	transcription start site region 5635	842 bp downstream
Tssr161220	transcription start site region 161220	1472 bp downstream
Tssr161221	transcription start site region 161221	1413 bp downstream
Tssr161222	transcription start site region 161222	1398 bp downstream
Tssr161223	transcription start site region 161223	1228 bp downstream
Tssr161224	transcription start site region 161224	1174 bp downstream
Tssr161225	transcription start site region 161225	996 bp downstream
Tssr161226	transcription start site region 161226	945 bp downstream
Tssr161227	transcription start site region 161227	895 bp downstream
Tssr161228	transcription start site region 161228	388 bp upstream
Tssr161229	transcription start site region 161229	421 bp upstream
Tssr161230	transcription start site region 161230	445 bp upstream
Tssr161231	transcription start site region 161231	462 bp upstream
Tssr161232	transcription start site region 161232	513 bp upstream
Tssr161233	transcription start site region 161233	585 bp upstream
Tssr161234	transcription start site region 161234	605 bp upstream
Tssr161235	transcription start site region 161235	670 bp upstream
Tssr161236	transcription start site region 161236	713 bp upstream
Tssr161237	transcription start site region 161237	767 bp upstream
Tssr161238	transcription start site region 161238	803 bp upstream
Tssr161239	transcription start site region 161239	852 bp upstream
Tssr161240	transcription start site region 161240	866 bp upstream
Tssr161241	transcription start site region 161241	902 bp upstream
Tssr161242	transcription start site region 161242	935 bp upstream
Tssr161243	transcription start site region 161243	1099 bp upstream
Tssr161244	transcription start site region 161244	1123 bp upstream
Tssr161245	transcription start site region 161245	1218 bp upstream
Tssr161246	transcription start site region 161246	1374 bp upstream
Tssr161247	transcription start site region 161247	1397 bp upstream
Tssr161248	transcription start site region 161248	1666 bp upstream
Tssr163547	transcription start site region 163547	408 bp downstream
Tssr163548	transcription start site region 163548	514 bp downstream
Tssr163549	transcription start site region 163549	591 bp downstream
Tssr163550	transcription start site region 163550	646 bp downstream
Tssr163551	transcription start site region 163551	731 bp downstream
Tssr163552	transcription start site region 163552	857 bp downstream
Tssr163553	transcription start site region 163553	943 bp downstream
Tssr163554	transcription start site region 163554	962 bp downstream
Tssr163555	transcription start site region 163555	989 bp downstream