rs254911545 SNP Detail

Summary

• ID
  rs254911545
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:121213237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTCTTTT AAAAATAGTT
  TTTATTCGTT TCCCTGAAGT ACAGCTAGAG CTTGTGAGGG GTCGGGAAGT TGGGCGGGGG
  CTGGGAGTGG GGTATGTGTG TGAGCGGCGC CTGGTCCCTT CTCCTTCACC TAGCCCAAGA
  GTGCGGGCAG GTGATGGATG CTATGACCCT AGACCCCCGA GTCCGGCCTG TGTGTCCTCG
  M
  CTCGCAGGCA GCCCCGGAAA CAAAGGGCGG CAGCCTAGGG CTTGACGCGA CCTCTGGGGT
  CATGCGTAGC AGAGCGGCTA GAGGCCAGCA GCGGCGCCTT CCTGCTACTT GGGGCCCAGG
  CGCCCTCCAC GGGATCGCGC TCGTCTGGTC TGCTGCAGAG GGGGGCGCAG CAAGGATCAG
  AAGGCTTGGC CCCCACCTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376271965	MGP_WTSI_8_123010398	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254911545					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376271965	MGP_WTSI_8_123010398	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121213237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21144	CpG island 21144	within coordinates
Gm51556	predicted gene, 51556	779 bp downstream
Gm63872	predicted gene, 63872	1182 bp upstream
Gse1	genetic suppressor element 1, coiled-coil protein	Intron
Rr401178	regulatory region 401178	405 bp upstream
Rr671531	regulatory region 671531	309 bp distal
Rr671532	regulatory region 671532	151 bp proximal
Rr671533	regulatory region 671533	204 bp proximal
Rr671534	regulatory region 671534	692 bp proximal
Rr671535	regulatory region 671535	1459 bp proximal
Rr671536	regulatory region 671536	1551 bp proximal
Rr671537	regulatory region 671537	1908 bp proximal
Tssr79753	transcription start site region 79753	650 bp upstream
Tssr79754	transcription start site region 79754	1116 bp upstream
Tssr79755	transcription start site region 79755	1154 bp upstream
Tssr79756	transcription start site region 79756	1681 bp upstream
Tssr79757	transcription start site region 79757	1708 bp upstream
Tssr79758	transcription start site region 79758	1734 bp upstream
Tssr79759	transcription start site region 79759	1918 bp upstream
Tssr79760	transcription start site region 79760	1993 bp upstream