rs254916524 SNP Detail

Summary

• ID
  rs254916524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118308057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAT GGCTCTCAGC TCACGCTCAC
  Y
  TGCACTTTAC TGCTCACAAT TGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323870302	CHEV_11_118278545	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254916524					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118308057 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	within coordinates
Cpgi4233	CpG island 4233	1330 bp proximal
Gm72450	predicted gene, 72450	1856 bp upstream
Rr403174	regulatory region 403174	1644 bp upstream
Rr461043	regulatory region 461043	1448 bp distal
Rr461044	regulatory region 461044	947 bp distal
Rr461045	regulatory region 461045	701 bp proximal
Rr461046	regulatory region 461046	1782 bp proximal
Rr461047	regulatory region 461047	1867 bp proximal
Tssr106139	transcription start site region 106139	1992 bp upstream
Tssr112167	transcription start site region 112167	1407 bp upstream
Tssr112168	transcription start site region 112168	1390 bp upstream
Tssr112169	transcription start site region 112169	1725 bp downstream
Tssr112170	transcription start site region 112170	1787 bp downstream
Tssr112171	transcription start site region 112171	1885 bp downstream