rs254927046 SNP Detail

Summary

• ID
  rs254927046
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41579521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTTTTATA TTTTTGAGGA TTTTTATGTG AGTTCTGTGT
  TTATATTATT CAAATTTATT ATTTTTTAAA AGGATTTTTA TTTTAAATTA TATATGTGTG
  C
  TCTTTTACTG TTGTTATGTG TGTATGAAAG CAAGGGCTAG AAAAGGGAGT TGGGAATTTA
  GGTGGTTGTG AGCTACCCTA TGTGGGTTCT GGGAACTGA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320728929	CHEV_3_41429008	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254927046					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41579521 () rs orientation: forward

Symbol	Name	Function Class
Gm66500	predicted gene, 66500	within coordinates
Sclt1	sodium channel and clathrin linker 1	1634 bp downstream