rs254935782 SNP Detail

Summary

• ID
  rs254935782
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105285698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGTGTT TTCCAATGGT
  CTTTTGTGAC CCCTGAAGGG GTTGTGACCC ACAGGTTGAG AACTGCTGTT GTTCCAGAAG
  TCCTGAGACC CATGATGGCT CTGTATGAGC TAATGAATCC GTGTTGGCAG CTGGTCCTAC
  TTGCTTTGTC CCACGTGTAC AACTTGTGAA TTGGTGTTCC AATCAGGCTA TTAACACATC
  G
  GGAGGCGGGG GCGCGGGGGG GGGGGCGGGG GGGGGACCTG CATCCGGGAG ACCCACAAAG
  CTTGCAGTCT CTGGATCCCA GTAGGAGCTC TGCTTCCTCC AGTCACCAGG CAGACTCTTG
  CTCCATTGTT CCCTTATCAC CTCTACAGCA CCCACAGAGG CTCTGCATGC ATGTCTTAGG
  AACCTAAGGT TACTTTGCAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350818435	MGP_WTSI_1_107254550	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254935782					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350818435	MGP_WTSI_1_107254550	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105285698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	952 bp distal
D1Mit307	DNA segment, Chr 1, Massachusetts Institute of Technology 307	1878 bp proximal
Gm17634	predicted gene, 17634	within coordinates
Rnf152	ring finger protein 152	1263 bp upstream
Rr416387	regulatory region 416387	1956 bp distal
Rr416388	regulatory region 416388	1314 bp distal
Rr416389	regulatory region 416389	1925 bp distal
Rr416390	regulatory region 416390	1393 bp distal
Rr416391	regulatory region 416391	1231 bp distal
Rr416392	regulatory region 416392	641 bp distal
Rr416393	regulatory region 416393	1051 bp proximal
Tssr8255	transcription start site region 8255	1205 bp downstream
Tssr8256	transcription start site region 8256	1187 bp downstream
Tssr8257	transcription start site region 8257	1116 bp downstream
Tssr8258	transcription start site region 8258	884 bp downstream
Tssr13126	transcription start site region 13126	1457 bp upstream
Tssr13127	transcription start site region 13127	1322 bp upstream
Tssr13128	transcription start site region 13128	1259 bp upstream
Tssr13129	transcription start site region 13129	1185 bp upstream
Tssr13130	transcription start site region 13130	1010 bp upstream