rs254938605 SNP Detail

Summary

• ID
  rs254938605
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115150485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTTCAATG GCCTGGTTTC ACTTTCAATT
  ACATTGTAAC ACTTCCACAC TTCCAATGGA ACTGTAGAAG AAAGCCAGCG TTTTATGGCC
  TGACAGTAAA GAAAACGTGT AGCAGCAGTG CCTAGATTTT TTTTTTTTAG TTTGAAGACC
  K
  ATTGCTGGCC ACTACGCAAC ACGATGTTTC AACGCGGATA AGATCAAACC CCAAAGAATA
  AGGAAGCCAC ACGTCCGGAC ACAAGAAGGC TGCAAAGAAA CGGGGTAACC GACAAGCAGC
  AAACAGTCGT TTAAAACAAA AACAAAAAAA                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484100	CHEV_10_114751636	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254938605					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115150485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	234 bp proximal
Gm10752	predicted gene 10752	1066 bp upstream
Gm67120	predicted gene, 67120	1049 bp upstream
Rab21	RAB21, member RAS oncogene family	within coordinates
Rr402237	regulatory region 402237	884 bp upstream
Rr402238	regulatory region 402238	1580 bp upstream
Rr439192	regulatory region 439192	1306 bp distal
Rr439193	regulatory region 439193	988 bp proximal
Rr439194	regulatory region 439194	1001 bp proximal
Rr439195	regulatory region 439195	1060 bp proximal
Rr439196	regulatory region 439196	1226 bp proximal
Tssr95806	transcription start site region 95806	451 bp upstream
Tssr95807	transcription start site region 95807	503 bp upstream
Tssr95808	transcription start site region 95808	1060 bp upstream
Tssr95809	transcription start site region 95809	1092 bp upstream
Tssr99318	transcription start site region 99318	295 bp downstream
Tssr99319	transcription start site region 99319	329 bp downstream
Tssr99320	transcription start site region 99320	927 bp downstream
Tssr99321	transcription start site region 99321	966 bp downstream
Tssr99322	transcription start site region 99322	1037 bp downstream