rs254945200 SNP Detail

Summary

• ID
  rs254945200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190703391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCATGGG TATCGTTTCT
  AAGTCACACC AGAAGAGGGC ATCAGATCCC ACTAGAGATG GTTGTGGAGA ACCATGTGGT
  TGCTGGGAAT GGAACTCAGG ACCTCTGGAA GAGCAGTCAG TGCTCTTAAC CAGCTGAGCC
  ATCTCACAGC CCGGGGAATC ATTTTTCAAT ACCACACTCC TCGCATGCCC ACTGCTTTCT
  Y
  TCCTTAGTCC CTTTCCTGAG TTCAAGATTA AGCAAGGCCC TTCCCTTGCC TCAACTCTTC
  CCTGGTAAGT GCTATGCCCC TGCCTCATGA GCCTTCTTAC ATTCCCATAG AGAAGGCCAA
  CTGTGTTACA GTAAATGTCA GGAGGGCCAC TGAGAACCAT AGCTCATAGT GGAGTATATC
  TGGAGGGAGC TTAGAGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320194429	CHEV_1_192795073	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254945200					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190703391 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr426014	regulatory region 426014			155 bp distal
Rr426015	regulatory region 426015			450 bp proximal
Rr426016	regulatory region 426016			1344 bp proximal
Vash2	vasohibin 2			Intron
				Noncoding-Transcript-Variant