rs254954491 SNP Detail

Summary

• ID
  rs254954491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131650453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAAACAA CAGTGGTAGG
  TTGGGATGTC CCAGGCTGGG ACAGGCTCCG TCTAAGTTGG TAGTCCTGGT GGAAATGGGA
  CCACCGGGGG AAGGTGGGCG ATGAGGTGGA ATGAGACCCT CTGCAGCTGT CTGGGGCAGT
  GACCGCAACT CTAACTGCCA CCACCTCAGG TCTGTTCTTC CTTCAGTCAA GTGGCTCTGT
  Y
  CCGGCAGGGC TAACTACTGC CAAAGCCCTG ACCCTGGGAT CGGACTGCTC CCCTGGAGAC
  AGGTCGGTCT GACCTGTGTG CAAAGCCTCC CCCAGCTGGC AGAGGCACCC TCCAGTTCTC
  AGCACTTCCT TCCCACTGCA CCCTAGCCCA GTGTGGGTAG CTCACTGCAC TCGGCGGCGG
  CGGCAGCTTC CCTTCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363283920	MGP_WTSI_4_131479057	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254954491					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363283920	MGP_WTSI_4_131479057	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131650453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14947	CpG island 14947	203 bp distal
Epb41	erythrocyte membrane protein band 4.1	271 bp downstream
Gm50475	predicted gene, 50475	1614 bp upstream
Rr85752	regulatory region 85752	1748 bp proximal
Rr100128	regulatory region 100128	52 bp distal
Tmem200b	transmembrane protein 200B	2 bp downstream
Tssr1320	transcription start site region 1320	1448 bp downstream
Tssr39358	transcription start site region 39358	1982 bp downstream
Tssr39359	transcription start site region 39359	1935 bp downstream
Tssr39360	transcription start site region 39360	285 bp upstream