rs254962352 SNP Detail

Summary

• ID
  rs254962352
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86399176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACTTTAGA GAAAATAACT TATCCTCACA
  AGGTGCCTGG GTGAGGGAGT GCGGCCCAAC CTTTCTTTCA AAAATTGCAT AAGACTGCTA
  CCCAGAGGAG GATTTCTTTG CTTCCACACC ATGTCTGGTG ATTTTTTTTT TCCTGTTTTT
  W
  GGAATTTTAA AACTGGGTTC TCTTGGAGtt ttgttccatg ttgatttttg ttgtttattt
  ttgtacactt ttgtttaatg ttttgcctgc actgtccaaa gaagccagaa gagggcgtca
  gatcccctga aactggagtt ctggattgtt                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319828359	CHEV_1_88368029	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254962352					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86399176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi508	CpG island 508	764 bp proximal
Gm41907	predicted gene, 41907	within coordinates
Rr371652	regulatory region 371652	273 bp upstream
Rr396149	regulatory region 396149	655 bp downstream
Rr396150	regulatory region 396150	within coordinates
Rr414594	regulatory region 414594	101 bp proximal
Rr414595	regulatory region 414595	1243 bp proximal
Tssr7756	transcription start site region 7756	683 bp downstream