rs254966858 SNP Detail

Summary

• ID
  rs254966858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97273684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTAACTC AAGTAGCAAA
  CCAAGCATTA AGGAGGAAGG AGACAGCTGT CTGAAGGACA AAGGAAGAAT CTCTGACAAA
  ACTGATCTTA AACAGATCCT GTGTTTGATC CCAGATGATC GGGGACACAC ACACCACCAC
  CACCACCACC ACCACCCCAA AAATTAGTCA TGTAAACTAT GGTAAACCAG AAGCAAAAAC
  Y
  GAATACTACT CACCTCCTGA AAATGTTGCA AAATCCTAAA GCATATTTTC AATATGCATG
  TAGTTCTACC TTACATATAT AATGAGAGAA TGTATACCCA TATGTTATCT ACTATGTTGA
  TTAATATTAT TAACGTGGAA TCTGTTACAC AGTATATAAT GAAAATGCAC AGGTTTTATG
  TAACATGAGT CAGACCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395111103	MGP_WTSI_15_97206234	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254966858					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395111103	MGP_WTSI_15_97206234	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97273684 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7620	CpG island 7620	1037 bp proximal
Pced1b	PC-esterase domain containing 1B	within coordinates
Rr391162	regulatory region 391162	within coordinates
Tssr132861	transcription start site region 132861	1855 bp downstream
Tssr132862	transcription start site region 132862	1815 bp downstream
Tssr132863	transcription start site region 132863	1767 bp downstream
Tssr132864	transcription start site region 132864	1744 bp downstream
Tssr132865	transcription start site region 132865	1597 bp downstream
Tssr132866	transcription start site region 132866	885 bp upstream
Tssr132867	transcription start site region 132867	1355 bp upstream
Tssr132868	transcription start site region 132868	1377 bp upstream
Tssr136113	transcription start site region 136113	1908 bp upstream