rs254967174 SNP Detail

Summary

• ID
  rs254967174
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102208267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTGCCG GCGCCCCCGC
  CCCGGCCTCC GGGGAGCCGA GCCAAGCAGA GGGCGGGAGG ACGGCGGCCG CGAGGCGGGG
  GCGCTTCGCT CACCGGCCCC GCCGCCCCCT CCGGCGGCCG GCGAGAACTG CGCCTGTCGG
  CCGGAGAAAC GCGGGCTCCT CCACCCGGGG CCTCACTTGG GCCTCGCTTC CTGCCCTTCC
  Y
  ACCCCCGGCT CACGGCGCCC TTCCCCGTTC CCTGATCATC TTGTCTACAG TTCTCCCGGT
  ATCGCCACTC GGCGTCTACC GCAGCCGCGG CTCGCTCCCT AGCCCCGGCC CCGGCGCACG
  TCCTCCGCCG CCTCGGTTAC CCGGCGCAGC GCGGCCTCTG AGCTCCCCGC TCCGGCGGCT
  CCCTTCTCGG CTCTGAGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384500218	MGP_WTSI_11_102178755	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254967174					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384500218	MGP_WTSI_11_102178755	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102208267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3917	CpG island 3917	within coordinates
Rr245873	regulatory region 245873	within coordinates
Tssr105213	transcription start site region 105213	582 bp downstream
Tssr105214	transcription start site region 105214	472 bp downstream
Tssr105215	transcription start site region 105215	426 bp downstream
Tssr111024	transcription start site region 111024	795 bp upstream
Tssr111025	transcription start site region 111025	763 bp upstream
Tssr111026	transcription start site region 111026	733 bp upstream
Tssr111027	transcription start site region 111027	182 bp downstream
Tssr111028	transcription start site region 111028	319 bp downstream
Tssr111029	transcription start site region 111029	346 bp downstream
Tssr111030	transcription start site region 111030	419 bp downstream
Tssr111031	transcription start site region 111031	595 bp downstream
Tssr111032	transcription start site region 111032	1500 bp downstream
Tssr111033	transcription start site region 111033	1652 bp downstream
Tssr111034	transcription start site region 111034	1901 bp downstream
Tssr111035	transcription start site region 111035	1941 bp downstream
Ubtf	upstream binding transcription factor, RNA polymerase I	within coordinates