rs254967500 SNP Detail

Summary

• ID
  rs254967500
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69579885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGACAC ATGTCTGAGA
  GTCCAAACAG AAAAGTAGAA AAGGAAAAGA AAGCTAAAGA CCATAAATCT GAAAGCAAAG
  AGAGAGACAT CAGAAGAAAT TCAGAAAAAG ATGATAAATA TAACAAAAAC AAAGTGAAGA
  AAAGGGGCAA ATCCAAGAGT AGGAGCAAGA GCAAGGAGAG ATCCAAGAGT AAGGAGCGAG
  A
  CTCGAAGCAC AGCAGACACG AAGACAAGAG GGTGAGGTCA AGAAGTAAAG AAAGGGATCA
  TGAGACTACT AAAGAAAAAG AAAAACCACT GGATCCTAAA GGGAAAGATC AGGAAAGGAG
  TAGAAGCAAA GAGAACTCCA AACAGGTAGA ATCAAAAAGT AATGAACATG ATCATAGCAA
  AAGTAAAGAA AAGGATAGAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss354377442	MGP_WTSI_2_69587598	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs254967500					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354377442	MGP_WTSI_2_69587598	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69579885 () rs orientation: forward

Symbol	Name	Function Class
Ppig	peptidyl-prolyl isomerase G (cyclophilin G)	within coordinates
Tssr18139	transcription start site region 18139	571 bp downstream
Tssr18140	transcription start site region 18140	542 bp downstream
Tssr18141	transcription start site region 18141	523 bp downstream
Tssr18142	transcription start site region 18142	504 bp downstream
Tssr18143	transcription start site region 18143	464 bp downstream
Tssr18144	transcription start site region 18144	268 bp downstream
Tssr18145	transcription start site region 18145	137 bp downstream
Tssr18146	transcription start site region 18146	47 bp downstream
Tssr18147	transcription start site region 18147	within coordinates
Tssr18148	transcription start site region 18148	26 bp upstream
Tssr18149	transcription start site region 18149	50 bp upstream
Tssr18150	transcription start site region 18150	96 bp upstream
Tssr18151	transcription start site region 18151	111 bp upstream
Tssr18152	transcription start site region 18152	187 bp upstream
Tssr18153	transcription start site region 18153	272 bp upstream
Tssr18154	transcription start site region 18154	376 bp upstream
Tssr18155	transcription start site region 18155	397 bp upstream
Tssr18156	transcription start site region 18156	439 bp upstream
Tssr18157	transcription start site region 18157	972 bp upstream