rs254972524 SNP Detail

Summary

• ID
  rs254972524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110245547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGTCCCTG GACACAGCGG CTTCGGGGTC
  CCCCGCCCCT GAGAGCGGGC TGCGGGACTC AGGCCCGCCC CTGCCAGCCC CGGGACGCAC
  CGCTCCACCC TCGACCAGCC TGCGCCCGCC CTCGACCCAA GATTTCTGGG GCATTGGCCG
  Y
  GCCTCTGGGT GATCCCTCCG GGCTCAAGTT GCAAGGGGGC GGGCCCCGGT CGGAGGTGGA
  GTCTCCCGCC AATTCAAGCT TTGACTATAA ATTGAGCTCC CAGAGCACCG AGGACCAGAT
  GCCTCGCCAG GCCGCCTCGA GGTTGGTGGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324157572	CHEV_12_111517323	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254972524					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110245547 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5110	CpG island 5110	within coordinates
Dio3	deiodinase, iodothyronine type III	117 bp upstream
Dio3os	deiodinase, iodothyronine type III, opposite strand	1045 bp upstream
Mir1247	microRNA 1247	984 bp upstream
Rr472866	regulatory region 472866	1035 bp distal
Rr472867	regulatory region 472867	within coordinates
Rr472868	regulatory region 472868	908 bp distal
Tssr115195	transcription start site region 115195	115 bp upstream
Tssr117772	transcription start site region 117772	157 bp upstream
Tssr117773	transcription start site region 117773	122 bp upstream