rs254980291 SNP Detail

Summary

• ID
  rs254980291
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60227428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCTTCCA TAACAATCTA
  CATCTTCCAG AATAATCAAC GTCTTCCACA AAATTCAGGT CTTCCAGAAA AATATCCAGG
  TCTTCCAACC AGTCTATGTC TTCCAGAAAA ATCCAGGTCT TCCAGCTCAT CTATGTCTTC
  CATCAGTTCA AGTCTTCCAG ATACCCATGT CTTCCATTAA ATCTAGGTCT TCCAATAGAT
  M
  TATGTCTTCC TGAAAATTAA CGTCTTCCAA TAATGTCCAA GTCTTCCAGC CAAGATATGT
  CTTCCTGAAG ATTAATGTCT TCCTGAAGAT TGACATCTTC CAGCAGAAAA TCTTTGTCTT
  CCATTAAATC CACATCTTCC AGAAAATCCA TGTCTTCCCA AAAATCCACA TCTTCCAGGA
  AATCAACGTC TTCCCCAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403586329	MGP_WTSI_X_58436997	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254980291					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403586329	MGP_WTSI_X_58436997	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60227428 () rs orientation: forward

Symbol	Name	Function Class
Cdr1	cerebellar degeneration related antigen 1	183 bp downstream
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Tssr5627	transcription start site region 5627	184 bp upstream
Tssr161077	transcription start site region 161077	563 bp downstream
Tssr161078	transcription start site region 161078	539 bp downstream
Tssr161079	transcription start site region 161079	507 bp downstream
Tssr161080	transcription start site region 161080	488 bp downstream
Tssr161081	transcription start site region 161081	356 bp downstream
Tssr161082	transcription start site region 161082	336 bp downstream
Tssr161083	transcription start site region 161083	259 bp downstream
Tssr161084	transcription start site region 161084	22 bp downstream
Tssr161085	transcription start site region 161085	5 bp downstream
Tssr161086	transcription start site region 161086	46 bp upstream
Tssr161087	transcription start site region 161087	68 bp upstream
Tssr161088	transcription start site region 161088	94 bp upstream
Tssr161089	transcription start site region 161089	117 bp upstream
Tssr161090	transcription start site region 161090	1586 bp upstream
Tssr161091	transcription start site region 161091	1695 bp upstream
Tssr161092	transcription start site region 161092	1809 bp upstream
Tssr161093	transcription start site region 161093	1854 bp upstream
Tssr161094	transcription start site region 161094	1878 bp upstream
Tssr161095	transcription start site region 161095	1919 bp upstream
Tssr161096	transcription start site region 161096	1958 bp upstream