rs254982003 SNP Detail

Summary

• ID
  rs254982003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:117942917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTCAGC CTTCGGGTTC
  ACAAACTATA CCTCCAAGAC ACCCCAAGAT TTTCTCCCCA GTAGTCTCCA GGTTACCCCT
  GACTGTCGCC ATCCAAAATA CATTCTGTAA TCTTGTCTAA AGGGGCGGGG GGGAGGGGAC
  GGACCCAAGT CACTTTATAC CCTTTATCCT GGAACTCCAA CAATCCCCCT GCCTCTGGCG
  Y
  TCTTTTTATA CTGGATACCG TTTGGAAAGT AAACCCTTCT TTTTCAGCAC ATATGGGGCA
  AAAGAAGAAA CACACACACA CACACACACA CACACACACA CACACACACA CACACACCTC
  TGCCCTTCCA CCTTGCTTCC TGGTCTCTGA CTCTGGCCTC CTGTGCTTCT TGCTACAGGC
  TCCGTGTTGG GCACAAAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355402443	MGP_WTSI_2_117938172	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254982003					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355402443	MGP_WTSI_2_117938172	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:117942917 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12075	CpG island 12075	253 bp distal
D2Mit62	DNA segment, Chr 2, Massachusetts Institute of Technology 62	13 bp proximal
Gm13986	predicted gene 13986	1234 bp upstream
Rr55415	regulatory region 55415	within coordinates
Rr397201	regulatory region 397201	1110 bp downstream
Thbs1	thrombospondin 1	within coordinates
Tssr19527	transcription start site region 19527	921 bp downstream
Tssr19528	transcription start site region 19528	537 bp downstream
Tssr19529	transcription start site region 19529	46 bp downstream
Tssr19530	transcription start site region 19530	218 bp upstream
Tssr19531	transcription start site region 19531	613 bp upstream
Tssr19532	transcription start site region 19532	655 bp upstream