rs254987377 SNP Detail

Summary

• ID
  rs254987377
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66055792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGAACTT TTCTTCTGGC
  ATAGCTTCTG AGCAGCCTCC CTGCATCTCA CATTCCTCCC CACCCCCCAC CCCACCCCCC
  TTTGTTCTTT TTGACACTAG GGACAGTCCA GGGCCCTGTA CATGCTAGGT GGGCACTCTA
  TCCTGAGCTG CAGCTGGGCT TCTGGAAGTT CATTGCTCCA AGTAACACCT TCACGTGCTG
  C
  GCTCTGACCT TGCTGGGCCT TTCTGGACCA TCATTTATTA ACTTTTTTCC TACCTGTATA
  TCTAACATTC TGCCTGAAGT AGAATTTATT TGTTTTTAAA CTCAGACTTA AAAATTGGTC
  TCAAATCCCT TTGTGTCAGC ATTCAATACT TAGAGGCTCT CCACCTGGAA ACTGTAAATA
  GAGAGAAACT TCAAGCAATT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325658628	CHEV_18_66082375	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254987377					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66055792 () rs orientation: forward

Symbol	Name	Function Class
Gm50118	predicted gene, 50118	353 bp downstream
Gm50119	predicted gene, 50119	1335 bp downstream
Gm58551	predicted gene, 58551	1038 bp upstream
Rr346799	regulatory region 346799	192 bp distal
Rr346800	regulatory region 346800	1609 bp proximal
Rr353052	regulatory region 353052	391 bp distal
Rr393825	regulatory region 393825	1492 bp upstream