rs254993264 SNP Detail

Summary

• ID
  rs254993264
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:59955738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCAGCA AAGTTTCCGT
  TCCGCGGAGC CCGCACCCCC CACACACACA CCCCGCCCGG TACCAGGGCC CCGCGCCCCG
  CGCCCTCCGC CCGGGACTCT AGTCGGGACC CCAGAGCCAC CGCTGCGTCG CAGCCGCACA
  ACAAAGAGCC ACACCGGGCG GCGCGGGTAA ACAGCGGCGG GCGCCTCGGG AGGGCTCCAG
  Y
  CCGCAGCCGC CGCTCTCCGC CCGGAACCCA CCTCGCCCGC ACCCCCGCAC CCCGGCTCTC
  AAACTCACCT TCACTTTCGA ACTGAGTTGC GGGGGAAGGG ATTTTCGCCC TTCCCGGGTG
  CGGGTTAAGC TTTTCGGAAT CCCCACCGCC TCCTTATTTC TCTTCTAATT CCTGCCAGAA
  AGTCTAGGGA GTTGGAGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354152685	MGP_WTSI_2_59963451	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs254993264					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354152685	MGP_WTSI_2_59963451	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:59955738 () rs orientation: forward

Symbol	Name	Function Class
Baz2b	bromodomain adjacent to zinc finger domain, 2B	within coordinates
Cpgi11675	CpG island 11675	within coordinates
Gm13620	predicted gene 13620	within coordinates
Rr396985	regulatory region 396985	1556 bp downstream
Rr396986	regulatory region 396986	1015 bp downstream
Rr557596	regulatory region 557596	1217 bp distal
Rr557597	regulatory region 557597	288 bp distal
Rr557598	regulatory region 557598	within coordinates
Rr557599	regulatory region 557599	293 bp proximal
Rr557600	regulatory region 557600	1794 bp proximal
Tssr24181	transcription start site region 24181	192 bp downstream
Tssr24182	transcription start site region 24182	213 bp downstream
Tssr24183	transcription start site region 24183	257 bp downstream
Tssr24184	transcription start site region 24184	418 bp downstream